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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGGATACATTCAATGCCACAATTGTTTCTCCTGTATATTATGTAATGTTCACAACTCTTACTATTATTGCCAGTGCAATAATGTTTAAGgtatgataatagattcatatttctttgattcatttggtgatatctcaaacttttctttttgctgaaaataggatatgacaagcttgactatttactttcag

Basic information

species Glycine max
transcript GLYMA12G03390.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03390.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0038g01940.t01 (Vitis vinifera), 5'ss of exon 7
GCTCTGGATACATTCAATGCCACAATTGTTTCTCCTGTATATTATGTAATGTTCACAACTCTTACTATTATTGCCAGTGCAATAATGTTTAAGgtatgataatagattcatatttctttgattcatttggtgatatctcaaacttttctttttgctgaaaataggatatgacaagcttgactatttactttcag--------------
|| ||||||||||| |||||  |||||||||||||  | |||||||| |||||||||||||| ||||| | ||| |||||||||||||| ||||||   |  |  ||   |||||  ||| |    ||  |||     ||   |    || ||  |||  | | || || |  ||| | | |  ||| | |  |              
GCGCTGGATACATTTAATGCAGCAATTGTTTCTCCAATTTATTATGTCATGTTCACAACTCTGACTATAAGTGCAAGTGCAATAATGTTCAAGgtagattgctgaatc--tatttacttggtgttgtttctgaagctgcattatcgggttctta-tgattacaagaaataatgagcataaat-cttattctttgcatgtgctctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053979|gb|BM732646.1|BM732646
EST:     CTCTTACTATTATTGCCAGTGCAATAATGTTTAAG                         GATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTC
genomic: CTCTTACTATTATTGCCAGTGCAATAATGTTTAAGgtatgataat ... ttactttcagGATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTC
EST: gi|7590267|gb|AW706023.1|AW706023
EST:     ATGTAATGTTCACAACTCTTACTATTATTGCCAGTGCAATAATGTTTAAG                         GATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTC
genomic: ATGTAATGTTCACAACTCTTACTATTATTGCCAGTGCAATAATGTTTAAGgtatgataat ... ttactttcagGATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTC