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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATGgtaaggagctaagatgttcattattttttagaggataaattttcattgtagtttttgcaattaatagtgtttagtgcttacctaatttcaattatgtcaatacattgacaattttagtttttccctcttag

Basic information

species Glycine max
transcript GLYMA11G37770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37770.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 7
CTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATGgtaaggagctaagatgttcattattttttagaggataaattttcattgtagtttttgcaattaatagtgtttagtgcttacctaatttcaattatgtcaatacattgacaattttagtttttccctcttag
||||| | || ||||| ||||| |||||    ||||| ||||||||||||||||||||||||   ||||| ||  | || || |  || ||||| ||||||||        | | | || ||||| ||||  | | ||| |    |||  || |||   | || |          ||  ||||      || ||| | |                                
CTATTGTCCTGTTTCACTATGACGGCCGGGTAACTGAGTGGGATGAGTTTGAATGGTCAAAGACTGCTATACACATTAGCGTACGAAAGCAGACAAAATGgta------ccaaacgctctttattctttatggtagaaaatagt-ttggtgtgtttatgactactgactcccttggc--acctgg----aaatatattag-------------------------------

upper sequence: GLYMA11G37770.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 5'ss of exon 3
CTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATGgtaaggagctaagatgttcattattttttagaggataaattttcattgtagtttttgcaattaatagtgtttagtgcttacctaatttcaattatgtcaatacattgacaattttagtttttccctcttag
| || || ||||||||||||||||| | ||| |||||||||||||| ||||| |||||||||  ||| ||||||||||| ||||  | ||| || |||||||||||||||              | |  | ||||| | |||| |    |  |||  |  ||  | ||   |     | | |||   ||  || | |   |  |    || | || |   ||   || |||
CCATCCTTCTATTTCATTATGATGGTCAAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCGGAGACAAACAAAATGgtaaggagct--------------tctgcaaaggattatttttgaacagaagtttcactttttctggtaggtttcaataagctatggtctgttttattcttttaacttcattctttgcaattttgtcctag

upper sequence: GLYMA11G37770.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 7
CTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATGgtaaggagctaagatgttcattattttttagaggataaattttcattgtagtttttgcaattaatagtgtttagtgcttacctaatttcaattatgtcaatacattgacaattttagtttttccctcttag
| || || ||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||  ||| ||||||||||| ||||  | ||| || |||||||||||||||              | |  | ||||| | |||| |    |  |||  |  ||  | ||   |     | | |||   ||  || | |   |  |    || | || |   ||   || |||
CCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCGGAGACAAACAAAATGgtaaggagct--------------tctgcaaaggattatttttgaacagaagtttcactttttctggtaggtttcaataagctatggtctgttttattcttttaacttcattctttgcaattttgtcctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024808|gb|CX711549.1|CX711549
EST:     AAT-GTCAAAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCTTGACATTGTGGCACCATATGACTA
genomic: AATGGTC-AAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATGgtaaggagct ... tccctcttagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
EST: gi|51337681|gb|CO981547.1|CO981547
EST:     GAATGGTCAAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: GAATGGTCAAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATGgtaaggagct ... tccctcttagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
EST: gi|57574426|gb|CX547401.1|CX547401
EST:     AATNGGTCAAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: AAT-GGTCAAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATGgtaaggagct ... tccctcttagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
EST: gi|57574192|gb|CX547167.1|CX547167
EST:     GAATGGTCAAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: GAATGGTCAAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATGgtaaggagct ... tccctcttagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA