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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacccacaactctcgacttttgatccatggaatctagagtttattggaatatgctgcttcaggatgtcccattttttcatcttcgtaaccttatcttcttccgtctctaattataagactctttcaatgaacttatgcttgtttcatggttcag

Basic information

species Glycine max
transcript GLYMA11G37650.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37650.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G156608_T03 (Zea mays), 5'ss of exon 2
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacccacaactctcgacttttgatc-catggaatctagagtttattggaatatgctgcttcaggatgtcccattttttcatcttcgtaac-cttatcttcttccgtctctaattataagactctttcaatgaacttatgcttgtttcatggttcag
 ||||| ||  | ||||||||||| ||||| ||| | |||||||| ||||||||| |||||||| |||| ||||| || ||||||||  ||||  | |||||||   | | |  |     || ||   ||  | |    ||| | || | |   |   |        | |||  |  |||      ||||  |||   ||||                                                            
TACTGATTCTCGTTTGAGACCAGACCAAAGGCATCTGGAAAATGGTGAATATGAGATGGCAAATTCAGAGAAACTTAGGCTTGAACAACTGCAACGGCAGgtaa-ccaacaattatatatgatttgacatggccttttgtcttgtgtctttcataggttatcaggcaatgataaca-attgacatgtcttgataatatttat------------------------------------------------------------

upper sequence: GLYMA11G37650.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G13170.1 (Arabidopsis thaliana), 5'ss of exon 7
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacccacaactctcgacttttgatccatggaatctagagtttattggaatatgctgcttcaggatgtcccattttttcatcttcgtaaccttatcttcttccgtctctaattataagactctttcaatgaacttatgcttgtttcatggttcag
||| || |||||  |||||||||| |||||||| |||||||| || |||||||||   |||||||| || ||||| |||||||||||||| |||||||||||| |  | | | |       | | || |||  | || | || |  | ||||   |      |  |||||    |    | |  |     ||  | ||    | || |                                                    
AACAGATTCAAGACTGAGACCAGACCAAAGACACTTAGAAAACGGTGAATATGAGTCAGCAAATGCCGAGAAACTGAGACTTGAACAGTTACAGAGACAGgtacaaaatctataggagaata-tgttaatc--ttgactatatacataattg---tgcatgaccacagga----ctgaatatagaagagtgtgccgtttgtgtgttgcag--------------------------------------------------

upper sequence: GLYMA11G37650.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0137g00290.t01 (Vitis vinifera), 5'ss of exon 7
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacccacaactctcgacttttgatccatggaatctagagtttattggaatatgctgcttcaggatgtcccattttttcatcttcg--taaccttatcttcttccgtctctaattataagactctttcaatgaacttatgcttgtttcatggttcag
 |||||||||||| || | |||||||| || ||||| || |||||||||||||||||||||||||| || || || ||||| ||||| |||||||||||||||  | ||  |     |||   |||   |   | |  |     || |  | |  ||   |  | |    | || ||  || | ||  | |  ||| || |||                                                           
TACTGACTCAAGGCTGCGGCCAGATCAGAGGCATTTGGAGAATGGAGAATATGAGCTGGCAAATGCGGAGAAGCTCAGACTCGAACACTTGCAGAGACAGgtatctcacttagtctcctctgttttcatttgttaggtttggccgtgttctagtttaaatttttcc----tatcacaagttgtgattgttggataaactaatca----------------------------------------------------------

upper sequence: GLYMA11G37650.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S40_145V6.1 (Physcomitrella patens), 5'ss of exon 9
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacccacaactctcgactttt--gatccatggaatctagagtttattggaatatgctgcttcaggatgtcc-cattttttcatcttcgtaaccttatcttcttccgtctctaattataagactctttcaatgaacttatgcttg--tttcatggttcag
 || || |||||||||||||| |||||||||||| |||| ||||| ||||||||    || ||| ||||||||||  ||||||||||   |||| ||| |||   |  |  |     || | |||||       || | || |   | | || |   ||||  | ||  |        ||||       |   | |    |||    ||     | ||||   | ||  || |  |  |||| ||    |  ||  ||||  |||
TACAGATTCAAGGTTGAGACCTGATCAAAGACATCTAGAGAATGGCGAATATGATGCTGCCAATTCAGAAAAACTGCGACTTGAACAAAAGCAGCGACGGgtgggtgtcataatgtccttgccttttccagagaattgcatgttatgctgatggagctatgtagattacgtgcacgagcattgaagggccagtgcacatgtatacggtttgcattataatctaaggaaactatttagaaactgatttaagagttggatggaccag

upper sequence: GLYMA11G37650.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S67_260V6.1 (Physcomitrella patens), 5'ss of exon 9
AACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaat--tacccacaactctcgacttttgatccatggaatctagagtttattggaatatgctgcttcaggatgtcccattttttcatcttcgtaaccttatcttcttccgtctctaattataagactctttcaatgaacttatgcttgtttcatggttcag
 || || |||||||||||||| |||||||||||| | || ||||| ||||||||    || ||| ||||||||||  ||||||||||   |||| |||  || | |  |||   || ||  |   |  | ||    |   |||  | ||   |  | ||      ||  |   |    | | |    |||     |  | ||  | ||       | |||   |||||  ||  |    ||   |  ||   ||        
TACAGATTCAAGGTTGAGACCTGATCAAAGACATCTGGAGAATGGTGAATATGATGCTGCCAATTCAGAAAAACTGCGACTTGAACAAAAGCAGCGACGAgtgagtcttactaccatcttgctcttgcttatgtcagagttctctacttgcgtaaactaacacttttgtgccagcgtaaatgtgaactctcttcgatttgatgatttttgtaactttattcggagactgatttgaaaggct---gggtgaaccag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722619|gb|BW679856.1|BW679856
EST:     ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGAA
genomic: ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacc ... catggttcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGAA
EST: gi|208075157|gb|GD874212.1|GD874212
EST:     ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAG                         GCAAGAAAGATGCAAGA
genomic: ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacc ... catggttcagGCAAGAAAGATGCAAGA
EST: gi|17020921|gb|BM091955.1|BM091955
EST:     ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGAA
genomic: ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacc ... catggttcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGAA
EST: gi|208153732|gb|GD954785.1|GD954785
EST:     ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGAA
genomic: ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacc ... catggttcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGAA
EST: gi|193596801|gb|FK549103.1|FK549103
EST:     ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAG                         GTCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGA
genomic: ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacc ... catggttcagG-CAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGA
EST: gi|208221576|gb|GE016010.1|GE016010
EST:     ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGAA
genomic: ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacc ... catggttcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGAA
EST: gi|13181499|gb|BG352839.1|BG352839
EST:     ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGAA
genomic: ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacc ... catggttcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGAA
EST: gi|51341985|gb|CO983302.1|CO983302
EST:     ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAG                         GCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGAA
genomic: ATGAGCTGGCAAATGCAGAAAAACTAAGACTTGAACAGTTGCAGAGACAGgtaaattacc ... catggttcagGCAAGAAAGATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGAA