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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGgtctgctgtctttatttctattttgcatatcgtgatttgtgaattttggttaacttttttataatggaaaaaatttcatttactgtttaacatttttttttaaatgtttaacattgttggatgtgaatgtcgggccgcag

Basic information

species Glycine max
transcript GLYMA11G36990.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G36990.3 (Glycine max), 5'ss of exon 7
lower sequence: AT1G67325.2 (Arabidopsis thaliana), 5'ss of exon 8
TGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGgtctg--ctgtctttatttctattttgc-atatcgtg------atttgtgaattttggttaacttttttataatggaaaa----aatttcat--------ttact-gtttaacatttttttttaaatgtttaacattgttggatgtgaatgtcgggccgcag-------------------------------
 || ||||| ||||||||||| || ||||| ||||| || || |||||||||||||| || |||||||| ||||||||||| || || ||||| || ||||| ||  |||  ||| ||| | |||  |  |  |||       |  | |  ||| | || |||| |     | |||  ||     || ||||        || ||   ||||   |  ||  || |||  | || | | | ||| |     |         |                               
CGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctgcttttttttgtgtttgactgtcccgtagagcgaacatatacattattgtgaactctagggcactggttaattcagatatcataaaacagcttgcttaattaatcgtagttcgtagatggcttacttggatagatcttgggattattttcttgatttctgacctttaaactcttctaattgcag

upper sequence: GLYMA11G36990.3 (Glycine max), 5'ss of exon 7
lower sequence: AT1G67325.1 (Arabidopsis thaliana), 5'ss of exon 7
TGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGgtctg--ctgtctttatttctattttgc-atatcgtg------atttgtgaattttggttaacttttttataatggaaaa----aatttcat--------ttact-gtttaacatttttttttaaatgtttaacattgttggatgtgaatgtcgggccgcag----------------------------------
 || ||||| ||||||||||| || ||||| ||||| || || |||||||||||||| || |||||||| ||||||||||| || || ||||| || ||||| ||  |||  ||| ||| | |||  |  |  |||       |  | |  ||| | || |||| |     | |||  ||     || ||||        || ||   ||||   |  ||  || |||  | || | | | ||| |     |         |                                  
CGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctgcttttttttgtgtttgactgtcccgtagagcgaacatatacattattgtgaactctagggcactggttaattcagatatcataaaacagcttgcttaattaatcgtagttcgtagatggcttacttggatagatcttgggattattttcttgatttctgacctttaaactcttctaattgcagcag

upper sequence: GLYMA11G36990.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0010g03700.t01 (Vitis vinifera), 5'ss of exon 7
TGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGgtctg--ctgtctttatttctattttgcata------tcgtgatttgtga-attttggt-taacttttttataatggaaaaaatttcatttac-tgtttaacatttttttttaaatgt---ttaacattgttgga-tgtgaatgtcgggccgcag----------------------
||| ||||||||||| ||||| |||||||| |||||||| || || || |||||||| || |||||||| |||||||| ||||| ||||||||||||||||| ||  | |  |||  ||  |   || | |      | || |||| | | ||    |  | |   |||||| ||  || |   ||   ||   |||| ||| |     | |||   |   ||   ||  ||| | | ||  | |        |                       
TGATAATGACTGGACCTGTCCTAAATGTGGAAATGTCAACTTCTCTTTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcagcgtttcgtttaagaatgtagaactagattgtcatttttaatatcacagcatgaaagttttatcattcaatagccttttcttggatgttaaacttaaaaatctaacaatcaattggaatctttgtagtatgtttattactttctaataattctctcttgcaaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193303415|gb|FK271601.1|FK271601
EST:     GAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGgtctgctgtc ... cgggccgcagGCCTCAAAGTCGGACAAAAATTCTA