Sequence
atgc intronic sequence ATGC exonic sequenceTTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATGCCCCAAATGGAACACTCTTTGAGCATTTACACAgtgagtacctatcattttggtgttattattacatagaaaataaatcaatgattgagtatcctgtatccctatttatgatcatcaacttttaatttgttgg...
Basic information
species | Glycine max |
transcript | GLYMA11G35570.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G35570.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g18370.1 (Oryza sativa), 5'ss of exon 6
TTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATGCCCCAAATGGAACACTCTTTGAGCATTTACACAgtgagta--cctatca-ttttggtgttattattacatagaaaataaatcaatgattgagtatcctgtatccctatttatgatcatcaacttttaatttgttgg
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TTTATGAACTTGCTTGGCTATTGTGAGGAAGAGCAACCTTTTACCAGAGTGATGGTGTTTGAATATGCTCCAAATGGAACACTTTTTGAGTATCTGCATGgtaagtgttcttgtcagttatcatgattctcttcatcatcatgtccagaaattgtcggtacatttttatttgaacat-tggtca--agatatcagcaacctca
upper sequence: GLYMA11G35570.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G56050.2 (Arabidopsis thaliana), 5'ss of exon 6
TTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATGCCCCAAATGGAACACTCTTTGAGCATTTACACAgtgagtacctat-cattttggt-------gttattattacatagaaaataaatcaatgattgagtatcctgtatccctatttatgatcatcaacttttaatttgttgg
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TTTGTCAACCTTCTTGGTTACTGTGAAGAAGAAGAACCTTTCACTAGGATCTTGGTCTTTGAATATGCATCAAACGGAACAGTCTTTGAACATTTACACTgtaagtaacaaagctctttagtcatatgagtcattattacactgtaagttg-tca--gattaaaagtgggaaaacaatatttacttttgctgcag-------------
upper sequence: GLYMA11G35570.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G40270.1 (Arabidopsis thaliana), 5'ss of exon 5
TTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATGCCCCAAATGGAACACTCTTTGAGCATTTACACAgtgagtacctatcattttggtgttattattacatagaaaataaatcaatgattgagtatcctgtatccctatttatgatcatcaacttttaatttgttgg
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TTTGCAAACCTTCTTGGTTATTGTGAAGAAAAGGAACCTTTCACCAGGATCTTGATCTTTGAGTATGCTCCAAATGGATCACTCTTTGAGCATTTACATTgtgagtactt---------------ttgtcacacaatcagcca-tgttggcttcatttctttgtgatctaaagagaagctaatcatttttttgttacag-
upper sequence: GLYMA11G35570.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0067g01550.t01 (Vitis vinifera), 5'ss of exon 8
TTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATGCCCCAAATGGAACACTCTTTGAGCATTTACACAgtgagtaccta--tcattttggtgttattattacatagaaaata-aatcaatgattgagtatcctgtatccctatttatgatcatcaacttttaatttgttgg
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TTTGTCAACCTTCTCGGATATTGTGAAGAAGAGGAACCTTTCACCAGAATGATGGTTTTTGAATATGCTCCGAATGGAACGCTTTTTGAGCATTTACATAgtaagcatcaaattctttttcttatcattttcttaaaaggactttaatttatggtcaaaatcaggatataacttggcaagttactctatattcagttgat---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254314364|gb|GR831949.1|GR831949EST: GGTGGTTTTTGAGTATGCCCCAAATGGAACACTCTTTGAGCATTTACACA TAAAAGAATCTGAGCACTTGGGATTGGGGAACA-GACTTAGAGTTGCCATG
genomic: GGTGGTTTTTGAGTATGCCCCAAATGGAACACTCTTTGAGCATTTACACAgtgagtacct ... ttgtttccagTAAAAGAATCTGAGCACTTGG-ATTGGGGAACAAGACTTAGAGTTGCCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATGCCCCAAATGGAACACTCTTTGAGCATTTACACAgtgagtacctatcattttggtgttattattacatagaaaataaatcaatgattgagtatcctgtatccctatttatgatcatcaacttttaatttgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataaa