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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAAAATCCATCTACTTTGATTTCTTTTGCCACTAAAACACTTAATGCTGGTCAAATTATATCCAAGTTGCATGTTATTGAGCTGGGTGCACAGCCAGgtctgtatatattttttctttatcacatttacctctactgtattaattaaactatggacaatattactgttttacaaatctttctcaaaataacagtttt...

Basic information

species Glycine max
transcript GLYMA11G35460.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 5
AATGAAAATCCATCTACTTTGATTTCTTTTGCCACTAAAACACTTAATGCTGGTCAAATTATATCCAAGTTGCATGTTATTGAGCTGGGTGCACAGCCAGgtctgtatatattttttctttatcacattt--acctctactgtattaa---ttaaactatggacaatat-tactgttttacaaatctttctcaaaataacagtttt-----------------------------------------------------------------
||||| || ||||| ||  | |||| ||||||| | || |||  ||||||||| || || |  || ||||||||||||||||| |||||||| ||||||||| ||||||||    |     |    ||||     | || | | |  |    || | |    |||   | || || | | |   | ||| |||      |    ||                                                                 
AATGAGAACCCATCAACCCTTATTTGTTTTGCCTCAAAGACAACTAATGCTGGACAGATCACTTCAAAGTTGCATGTTATTGAACTGGGTGCCCAGCCAGgtttgtatataaaaatcaccaagtctattttgttttttattctttctagtgctacatttcaaacatcttgtattgatgtgcttgttttt-tcatgtgggcttcctttttcttttgaaagatgttgcaccatactgatatcaccatttttcttactgattgtttggttgtag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ13237 (Selaginella moellendorffii), 5'ss of exon 7
AATGAAAATCCATCTACTTTGATTTCTTTTGCCACTAAAACACTTAATGCTGGTCAAATTATATCCAAGTTGCATGTTATTGAGCTGGGTGCACAGCCAGgtctgtatatattttttctttatcacatttacctctactgta-ttaattaaactatggacaatattactgttttacaaatctttctcaaaataacagtttt
|| |||  ||| || ||| |||| || || || || ||  || |||   ||||     |  |||| |||||||||||||| || || ||||| |||||||||||||      |||   |||| |    ||       ||  | || || |                                                   
AACGAAGCTCCTTCCACTCTGATATCGTTCGCAACGAAGTCAGTTACGTCTGGCACGCTAGTATCAAAGTTGCATGTTATCGAACTTGGTGCCCAGCCAGgtctgttgtctgtttccttttagcgtgattcttatacctaaagttcatcag--------------------------------------------------