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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTGGATATTGCTGGTCTTAAGAGCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTGgtactgtataatatacttttggtctcaattctattctattatagtacctgaaggaattgcttatggtcatgtaaggttatggaccagtttgtttaaactt...

Basic information

species Glycine max
transcript GLYMA11G31750.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G31750.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g08450.t01 (Vitis vinifera), 5'ss of exon 7
GCACTTGGATATTGCTGGTCTTAAGAGCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTGgtactgtataatatacttttgg-tctcaattctattctattatagtacctgaaggaattgcttatggtcatgtaaggttatggaccagtttgttt--aaactt---------------------------------------------------------------------------
|||||||||| |||||||||| ||||| || || || ||| |||| |||||||| ||  ||||||| ||||||||||||||||  || | |||       |||| |||| |||| |   |  |   |  | ||      |     |   || | |       || | | ||  ||| ||                                                                           
GCACTTGGATGTTGCTGGTCTGAAGAGTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTGgtactgttcaacagactccaaaacctcagttcttttctgtgccaaaaagaggggaaaaaaaa-acaaaaaaacaaagctcatttttaggtggcttgcaaaattgcatttgctaggctgcaactcttctatttcttgtcatgatataattatgctgacatgaacttctgatgccttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294239|gb|FG986328.1|FG986328
EST:     GCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTG                         ATTGCAAGGATTTTCCTATTCATGTTCTTTTTTATCCACATGTGGACCCAT
genomic: GCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTGgtactgtata ... tgtgctgcagATTGCAAGGATTTTCCTATTCATGTTCTTTTTTATCCACATGTGGACCCAT
EST: gi|192314283|gb|FK007021.1|FK007021
EST:     GCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTG                         ATTGCAAG-ATTTTCCTATTCATGTTCTTTTT-ATCCACATGTGG
genomic: GCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTGgtactgtata ... tgtgctgcagATTGCAAGGATTTTCCTATTCATGTTCTTTTTTATCCACATGTGG