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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTGAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACGCTATTTGAGCATCTACACAgtaagtgctgttttgttcaaaattcacttgcaagattgcatcacacgcatgttctttaagaatcattgcagcctaaaatgcagttttcttggtgtatcct...

Basic information

species Glycine max
transcript GLYMA11G29010.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G29010.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g18370.1 (Oryza sativa), 5'ss of exon 6
TTTGTGAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACGCTATTTGAGCATCTACACAgtaagtgctgttttgttcaaaattcacttgcaagattgcatcacacgcatgttctttaagaatcattgcagcctaaaatgcagttttcttggtgtatcct--------
||| ||||  |  |||| |||||||| ||  |  | || || || ||  ||||||| ||||| ||||||||||||||||| || |||||| |||| ||  ||||||| |   ||||    | ||  | ||      | |||||    ||||| |   ||   ||  | ||   | |  || |  ||  |     ||||          
TTTATGAACTTGCTTGGCTATTGTGAGGAAGAGCAACCTTTTACCAGAGTGATGGTGTTTGAATATGCTCCAAATGGAACACTTTTTGAGTATCTGCATGgtaagtgtt--cttgtc---agttatcatgattctcttcatcat---catgtccagaaattgtcggtacatttttatttgaacattggtcaagatatcagcaacctca

upper sequence: GLYMA11G29010.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g01510.1 (Oryza sativa), 5'ss of exon 8
TTTGTGAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACGCTATTTGAGCATCTACACAgtaagtgctgttttgttcaaaattcacttgcaagattgcatcacacgcatgttctttaagaatcattgcagcctaaaatgcagtt-ttcttggtgtatcct-----------
||  |||| || ||||| || || | |    |  |||||||||| ||||||||||| || ||||||||||||  |||  | || ||||||||| | || ||||||     |  |  | | ||||  |||| | |  ||    |     ||     | |||||  |    |   |||   ||| || || |  |||||   |           
TTCATGAACCTGATTGGTTACTGCGCATGCGAGGAGCCATTCACCAGGATGATGGTGTTCGAGTATGCTCCATGTGGTTCCCTCTTTGAGCATTTGCATAgtaagcc---tcctaataataattt-cttgtatg--tgttcgatcttgattaatctgaagaacaaacaaactgtaactggcaattgttgtatgtgtaaatttggttttgcag

upper sequence: GLYMA11G29010.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G135359_T04 (Zea mays), 5'ss of exon 5
TTTGTGAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACGCTATTTGAGCATCTACACAgtaagtgctgttttgttcaaaattcacttgcaagattgcatcacacgca-tgttctttaa-----gaatcattgcagcctaaaatgcagttttcttggtgtatcct----------------------------
||| ||||  |  |||| || ||||| ||  |  | || || || ||  ||||||| ||||| |||||||||||||| || || ||||||||||| ||  ||||| ||  |  |||    | ||     |    ||    |||||   | ||||||| |        |   ||    |    | | | |  || ||| |  |   |                            
TTTATGAACTTGCTTGGCTACTGTGAGGAAGAGCATCCCTTTACCAGAGTGATGGTATTTGAATATGCTCCAAATGGGACACTTTTTGAGCATCTCCATGgtaagcgcgttgctgtcatgagtttctcagtttcatc-tgtcacaaaaactgttcttcagcgtgtagagttttatcactatgacttctgcattgttgatcaaagtttggcaatgccttcctgatttcaccgcag

upper sequence: GLYMA11G29010.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G095588_T01 (Zea mays), 5'ss of exon 7
TTTGTGAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACGCTATTTGAGCATCTACACAgtaagtgctg-ttttgttcaaaattcacttgcaagattgcatcacacg----catgttctttaagaatcattgcagcctaaaat--gcagttttcttggtgtatcct---------------------------------------------------------------------------------
 || |||| ||| | || |||||||||||  | || |||||||   |||||||||| || ||||||||| |||||||| | ||||||||||   | ||  || |||  |  || ||       ||   || || |  |   |     |            |  | || | |||    ||   ||  ||||| |||         |                                                                                   
CTTTTGAACCTTGTGGGTTATTGTGAAGACGAAAAACCATTCATTCGGATGATGGTGTTCGAGTATGCTTCAAATGGATCACTATTTGAGCGCTTGCATGgtgagttttaattgtgggttgcctttcttttcaggggtatgttgtggggtactgcaaagctgcaaaagccttgttatctgttattagcagtcttcacacaagggctcatgatgttagcagttgtgacaggaaaattcatataagcaggtttacaaattctaattatcatcaaaacattgttgttgcag

upper sequence: GLYMA11G29010.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g07030.t01 (Vitis vinifera), 5'ss of exon 8
TTTGTGAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACGCTATTTGAGCATCTACACAgtaagtgct--gttttgttcaaaattcacttgcaagattgcatcacacgcatgttctttaagaatcattgcagcctaaaatgcagttttcttggtgtatcct----------
|||||||| |||||||| | |||||||||| ||||||| || || || |||||||||||||| |||||||| || |||||||| ||||||||||| |||||| |||     | |||  |||| ||  ||   ||    ||||      |||| || || ||| |    || |    |    | |  | || || | |||             
TTTGTGAACCTTATTGGGTTTTGTGAAGAGGATAAGCCTTTTACGAGAATGATGGTTTTTGAATATGCTCCTAACGGAACGCTCTTTGAGCATCTGCACAgtgagtatctagctttcctcaatatatacagcca----tgca------gcatatttttcaaggaaatatgtacttcatttagta--tatcatgatctattgcacaaaccaac