Sequence
atgc intronic sequence ATGC exonic sequenceAATTCAATGCCAGCTGCTGCTGGAGCCGTCGCTGCTGCAGCTGTTGCTGATCAGATGCTGGGTCCCAAGGAAGATAGACATTTGGGAATTATCCTGgtatttttctggcatgatgagtagttagatactgatgcaaaacttgataattagcttcgattttattatgagataattagtttccatcttgtttagtttc...
Basic information
species | Glycine max |
transcript | GLYMA11G27870.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 6
AATTCAATGCCAGCTGCTGCTGGAGCCGTCGCTGCTGCAGCTGTTGCTGATCAGATGCTGGGTCCCAAGGAAGATAGACATTTGGGAATTATCCTGgtatttttc-tggcatgatgagtagttagatactgatgcaaaacttgataatta-gcttc--gattttattatgagataattagtttccatcttgtttagtttc--------------------------------------------------------------------------------------
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AATTCAATGCCAGCCGCTGCAGGAGCTGTTGCCGCAGCAGCGGTAGCTGATCAAATGCTTGGACCGAAAGAAGATAGACATCTAGCAATTGTCCTGgtatttgtagccacatagatgttggtcata-gtttctgcaggtcttttagcttatgtttcctagtttgattgtaagg-agctggacgttgttgtggctggctattttatttaacttataaacgtaaatggaaaaaaaaaaaaaaagactggatgttctgattcacaccattcccgtcaaaattgtattag
upper sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 6
AATTCAATGCCAGCTGCTGCTGGAGCCGTCGCTGCTGCAGCTGTTGCTGATCAGATGCTGGGTCCCAAGGAAGATAGACATTTGGGAATTATCCTGgtatttttctggcatgatgagtagttagatactgatgcaaaacttgataattagcttcgattt-tattatgagataattagtttccatcttgtttagtttc
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AATGCAATGCCAGCAGCTGCTGGAGCTGTTGCAGCTGCTGCTGTAGCTGATCAGATGCTTGGTCCGAAAGAGGATAGACATTTGGCAATTGTCCTGgtatttt-ctgtcattactgattgattttgactattcataattttaatgatgctactctattgacaattcaatgtgattggaattcaaacattaaaatcctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9820643|gb|BE556153.1|BE556153EST: CTGATCAGATGCTGGGTCCCAAGGAAGATAGACATTTGGGAATTATCCTG GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGA
genomic: CTGATCAGATGCTGGGTCCCAAGGAAGATAGACATTTGGGAATTATCCTGgtatttttct ... ttttatgtagGTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTCAATGCCAGCTGCTGCTGGAGCCGTCGCTGCTGCAGCTGTTGCTGATCAGATGCTGGGTCCCAAGGAAGATAGACATTTGGGAATTATCCTGgtatttttctggcatgatgagtagttagatactgatgcaaaacttgataattagcttcgattttattatgagataattagtttccatcttgtttagtttc
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA