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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTCATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgtagaacaggcgtttctgcaaacaatgtgaagtgaatgtcactgaacagttaactctttaaaaaaaataactcattaacaacgtaccaatttaa...

Basic information

species Glycine max
transcript GLYMA11G19970.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19970.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g57330.2 (Oryza sativa), 5'ss of exon 5
TTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTCATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgtagaacaggcgtttctgcaaacaatgtgaagtgaatgtcactgaacagttaactctttaaaaaaaataactcattaacaacgtaccaatttaa--
 ||  | || ||  |||  || || ||  |  | |||||  |  |   |||||| |  || |||| ||||||||| || ||||||||||| ||||||||||||||| |    |    |   ||   |     |||     |||  |       | |||    | |   |||  | |  | | |   |  |  || ||     
CTCCATCGGCTCTGTCACCGTTGCAGAATTGGACTGGGGTAACAAAGATCATATAAGAGCTGTTGATCCTCCATTCGATTACATCATTGGAACTGATGTTgtaagttttctgcgctggcagct-tgagtttggtgcctcaaatagcttatcctacttactgatatgctaaatttcatgcgtca-tgatatttcagttgttct

upper sequence: GLYMA11G19970.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G471805_T01 (Zea mays), 5'ss of exon 6
TTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTCATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgtagaacaggcgtttctgcaaacaatgtgaagt--gaatgtcactgaacag------ttaactctttaaaaaaaataactcattaacaacgtaccaatttaa
| |  | || || || |  || || ||  |  | |||||  |  |    ||||| ||||| ||||  ||||||||||| ||||| ||||| ||||| ||||||||| | |    |  || |||   ||   | |||| |  |  | |||   ||||        | ||| | |    |    | ||      || | | ||       
TACCATCGGCTCAATTACAGTTGCAGAATTGGACTGGGGGAACAAAGAACATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttggttatgcagtgtct-tgaatcttctgaactctgcctctcaaataacaaaccctacttactttctggtcatgcaagctttcatgcagcatgcc-------

upper sequence: GLYMA11G19970.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G471805_T02 (Zea mays), 5'ss of exon 6
TTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTCATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgtagaacaggcgtttctgcaaacaatgtgaagt--gaatgtcactgaacag------ttaactctttaaaaaaaataactcattaacaacgtaccaatttaa
                    | || ||  |  | |||||  |  |    ||||| ||||| ||||  ||||||||||| ||||| ||||| ||||| ||||||||| | |    |  || |||   ||   | |||| |  |  | |||   ||||        | ||| | |    |    | ||      || | | ||       
--------------------TTGCAGAATTGGACTGGGGGAACAAAGAACATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttggttatgcagtgtct-tgaatcttctgaactctgcctctcaaataacaaaccctacttactttctggtcatgcaagctttcatgcagcatgcc-------

upper sequence: GLYMA11G19970.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0017g01120.t01 (Vitis vinifera), 5'ss of exon 8
TTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTCATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgta--gaacaggcgtttctgcaaacaatgtgaagtgaatgtcactgaacagttaactctttaaaaaaaataactcattaacaacgtaccaatttaa
||||||||||||  || |||| || |||||  | |||||| ||||   |||||| |||||||||  ||| |||||||| | ||| ||||||||||||||||||||| ||  | |   |  | | |     |||    ||   ||||    | | ||  | |||   |   |     |  |  | || |  ||    |  |||
TTCATTTGGTTCTGTCCAGGTAGCAGAGCTGGACTGGGGAAATGAAGATCATATAAAGGCAGTTAATCCACCATTTGATTTCATTATTGGCACTGATGTTgtaagtttactggatgagattctttttttgcaaaaaaaaaaaaatgcaggttacca--tgacttactttcagtctcattttctgaaaagagtgaataaataa

upper sequence: GLYMA11G19970.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0061g00490.t01 (Vitis vinifera), 5'ss of exon 8
TTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTCATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgta--gaacagg----cgtttctgcaaacaatgtgaag-tgaatgtcactgaa---cagt-taactctttaaaaaaaataactcattaacaacgtaccaatttaa
||||||||||||  || |||| || |||||  | |||||| ||||   |||||| |||||||||  ||| |||||||| | ||| ||||||||||||||||||||| ||  | |   |      ||| |||||| ||   |||| | |   | ||| |    |||| | | | | | |||| | | | | | |||                
TTCATTTGGTTCTGTCGAGGTAGCAGAGCTGGACTGGGGAAATGAAGATCATATAAAGGCAGTTAATCCACCATTTGATTTCATTATTGGCACTGATGTTgtaagtttactggatgagattctttttttgcaaaaaaaaagaaggttaccatgacttactttcagtctcattttctgaaaagagtgaataaataatttta-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337678|gb|BI498334.1|BI498334
EST:     ATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTT                         GTTTATGTAAAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTA
genomic: ATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgtag ... ttctttgaagGTTTATGTAGAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTA
EST: gi|192295995|gb|FG989403.1|FG989403
EST:     ATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTT                         GTTTATGTAGAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTA
genomic: ATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgtag ... ttctttgaagGTTTATGTAGAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTA
EST: gi|192324407|gb|FK015758.1|FK015758
EST:     ATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTT                         GTTTATGTAGAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTA
genomic: ATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgtag ... ttctttgaagGTTTATGTAGAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTA