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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGAAGATCATATTTCATGGCTTCTTCAGCATGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGgtatttaagtttatcctaattcaatctaatttctaatgattttatgcttatcggaattagatgtgtaaaattacagaataaagggttcttgtgtagcaca...

Basic information

species Glycine max
transcript GLYMA11G19660.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19660.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g11880.1 (Oryza sativa), 5'ss of exon 7
TACTGAAGATCATATTTCATGGCTTCTTCAGCATGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGgtatttaagtttatcctaattcaatctaatttctaatgattttatgcttatcggaattagatgtgtaaaattacagaataaagggttcttgtgtagcaca------
| ||||||| |||||||| ||||||||||| ||||| ||||||||||| || |||||||  |||||| | || || ||||| |  || || ||||||||||||   ||||  |  |   || | | | |     | | | |  ||  |  |  | ||||  ||  | |   |   ||    |   || |||| ||| |        
TGCTGAAGACCATATTTCTTGGCTTCTTCAACATGGTTGGCATGAAAAGGCATTGGCTGCAGTTGAAGCAGGACAAGGACGAACCGAGCTTCTTGATGAGgta---aagtagaaacagtttgagtttgaac---agtaaatgaataatggtatgcattatctgcttgatgatgaggatgctacccttattgtttaggaaccttcaa

upper sequence: GLYMA11G19660.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G040247_T01 (Zea mays), 5'ss of exon 7
TACTGAAGATCATATTTCATGGCTTCTTCAGCATGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGgt-atttaagtttatcctaattcaatctaatttctaatgattttatgcttatcggaattagatgtgtaa--aattacagaataaagggttcttgtgtagcaca
| |||||||||||||| | ||||||||||| ||||| || ||||||||||| |||||||  |||||  | || || ||||| | ||| || ||||||||||| |  ||     ||  |  ||  |   | ||  || | |       |    |   ||        |||  | |||     |  |   || | ||     || 
TGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTTGCCATGAAAAAGCATTGGCTGCAGTTGAGGCAGGGCAAGGACGCACTGAGCTTCTTGATGAGgtgaactagagaaatagttgtttga---atttgatagtaacgcagaacaatacatgatccctctgataatgagttattccttttactattttagtaacctacc

upper sequence: GLYMA11G19660.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 7
TACTGAAGATCATATTTCATGGCTTCTTCAGCATGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGgtatttaagtttatcctaattcaatctaatttctaatgattttatgcttatcggaattaga-tgtgtaaaattacagaataaagggttcttgtgtagcaca--------
| ||||||||||||| || ||||| ||||| ||||||||||||||||||||||| || |  |||||| | || || || ||||||||||| ||||||||||| |||       ||||  |||| | | |||| ||   ||||| ||   ||     |   | | |||    ||      |   ||||| || ||  |            
TGCTGAAGATCATATCTCTTGGCTCCTTCAACATGGGTGGCATGAAAAAGCTTTAGCAGCAGTTGAAGCAGGGCAAGGGCGGAGTGAACTCCTTGATGAGgttttt------ttcctttttcattttcatttttatgtattttttgggcattatgttcccactatgtgtctttgtg---tttggggtttttttggggttgggtgggggg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502313|gb|AW203686.1|AW203686
EST:     CTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAG                         GTGGGATCTANGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAA
genomic: CTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGgtatttaagt ... atctttgcagGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAA
EST: gi|10237520|gb|BE806408.1|BE806408
EST:     CTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAG                         GTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAA
genomic: CTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGgtatttaagt ... atctttgcagGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAA
EST: gi|7693152|gb|AW761249.1|AW761249
EST:     CTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAG                         GTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAAGAAAATACAGTGA
genomic: CTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGgtatttaagt ... atctttgcagGTGGGATCTAGGTACCTTGATCATCTGATTGTGG-AAAGAAAATACAGTGA
EST: gi|151399580|gb|EV269451.1|EV269451
EST:     CTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAG                         GTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAA
genomic: CTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGgtatttaagt ... atctttgcagGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAA
EST: gi|17518655|gb|BM187697.1|BM187697
EST:     CTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAG                         GTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAA
genomic: CTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGgtatttaagt ... atctttgcagGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAA