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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCAGAAATCTGCAGAGCTACTTCTTGATTTGAAAGTGAATTCCATAATTAGCAGTCTTAACAAAGCTTGTATCGGGACAGCCACGATCATCTCCCAGgtaggctcactcttggtactacatagttagttccatcatgtctaattcctatttcctagtttaatctattaaattgcaagtatttgcatctacttctctc...

Basic information

species Glycine max
transcript GLYMA11G19400.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19400.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0061g01340.t01 (Vitis vinifera), 5'ss of exon 7
TCCCAGAAATCTGCAGAGCTACTTCTTGATTTGAAAGTGAATTCCATAATTAGCAGTCTTAACAAAGCTTGTATCGGGACAGCCACGATCATCTCCCAGgtaggctcactcttggtactacatagttagt-tccatcatgtctaattcctatttcctagtttaatct---attaaattgcaagtatttgcatctacttctctc-----------------
 |||| ||| |||| |||||||||||||||||||| ||||  | |||||||||||| | ||| |  || | | | | ||||||||| | |||||||   ||| | |||  ||   |  | | |  | |   |  | ||  ||  |||| |  |    |  | | | |   |||  | ||||    | |  |  || | |                     
GCCCAAAAAACTGCTGAGCTACTTCTTGATTTGAAGGTGAGCTGCATAATTAGCAGCCCTAAGATTGCCTCTGTTGAGACAGCCACAACCATCTCCAGAgtaagatcatcctcaatgtt-cttgatcatcatataacaattcatattctttctgttgaaatgagtatcaaattccactgcagagctctctacttattccaactggttgacttgcttatag