Sequence
atgc intronic sequence ATGC exonic sequenceACTTAAACCTGGAGAGAACCCTAGGCCTCGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTAAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatatagcttttcttgtgcttttcctacatctcagtcctgaacttatatttaacatttgaatactaactattttctttaatctcttgttacaattcaacag
Basic information
species | Glycine max |
transcript | GLYMA11G18290.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G18290.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g64560.2 (Oryza sativa), 5'ss of exon 6
ACTTAAACCTGGAGAGAACCCTAGGCCTCGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTAAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatatagctttt-cttgt-gcttttcctacatctcagtcctgaacttatatttaacatttgaatactaactattttctttaatctcttgttacaattcaacag
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ATCTAGACCAGGGGAGAGTGCAAGACCGAGGCCTAAAGATCGGCAAATGATTCAAGACCGTATAAAGGAGCTTCGTGAAATAGTACCTAACAGTGCAAAGgta-acagcaccaacacatagatacccctatat-tgacctttaaaataaaacacattattt--atcatatttttggtacttagatttctgtt-tgattaaacag
upper sequence: GLYMA11G18290.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G27230.2 (Arabidopsis thaliana), 5'ss of exon 5
ACTTAAACCTGGAGAGAACCCTAGGCCTCGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTAAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatatagcttttcttgtgcttttcctacatctcagtcctgaacttatatttaacatttgaatactaactattttctttaatctcttgttacaattcaacag
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GCTTAAACCAGGAGAGAACCCAAGACCAAGGCCTAAAGATCGCCAAATGATCCAAGATCGTGTCAAAGAGCTGCGTGAAATAATACCAAACGGTGCAAAAgtaagt-gaaaaacttatctgttcttggcaaattaaac---aatccctaagaaaggtt--attactaacaaagagt----acatgtggtttttatttaacag
upper sequence: GLYMA11G18290.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0009g00440.t01 (Vitis vinifera), 5'ss of exon 6
ACTTAAACCTGGAGAGAACCCTAGGCCTCGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTAAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatatagcttttcttgtgcttttcctacatctcagtcctgaacttatatttaacatttgaatactaactattttctttaatctcttgttacaattcaacag
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GTTTAAACCTGGCGAGAATCCCCGACCTAGGCCAAAAGATCGCCAAATGATCCAAGATCGTGTGAAAGAGTTACGCGAAATTGTACCAAATGGGGCAAAGgtaactcatctttcttcctttcttcct-cacttttttgaggacattttact--atattgagatactgattatgtcctctaatctactgatgtggtttaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207698174|gb|GD679559.1|GD679559EST: TTCAAGATCGTGTAAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAA TGTAGCATAGATGCACTTCTGGAA
genomic: TTCAAGATCGTGTAAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatatagct ... aattcaacagTGTAGCATAGATGCACTTCTGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTAAACCTGGAGAGAACCCTAGGCCTCGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTAAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatatagcttttcttgtgcttttcctacatctcagtcctgaacttatatttaacatttgaatactaactattttctttaatctcttgttacaattcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA