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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGCAATGTAAACCCCATTGgtacttacacatctcattctcaatccaaacttgtgtatcaatggcatcataatggggacaatgctaatttagctgagctcatcataatgtttacctcaat...

Basic information

species Glycine max
transcript GLYMA11G15010.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 7
GATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGCAATGTAAACCCCATTGgtacttacacatctcattctcaatccaaacttgtgtatcaatggcatcataatggggacaatgctaatttagctgagctcatcataatgtttacctcaat
||| ||||||||||| ||||||||||||||||| || ||||||| |||||| ||| | || ||||||||||| ||||| ||||| || |||| || ||  | ||||  |      |   |||| | | | |   |  | ||    |  || |  ||   |     |   ||   |      | ||| ||
GATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcatctttcatggttttcttaggtttgttttttatttaaaaaaaaaaaaaggaaaagaaaagaaaagaaggaaaataggatgaaaaatctctat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525432|gb|BU084243.1|BU084243
EST:     TCTTGTGCATCCACAACCAGAAAGCTATTGGGGCAATGTAAACCCCATTG                         GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
genomic: TCTTGTGCATCCACAACCAGAAAGCTATTGGGGCAATGTAAACCCCATTGgtacttacac ... gtatgaacagGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
EST: gi|18040716|gb|BM309010.1|BM309010
EST:     CTTGTGCATCCACAACCAGAAAGCTATTGNGGGCA-TGTAAACCCCATTG                         GAGTTCGGAATTGTTATGATGAGGGCAAGCGTGTTGCAAAAACTTTGATGT
genomic: CTTGTGCATCCACAACCAGAAAGCTATTG-GGGCAATGTAAACCCCATTGgtacttacac ... gtatgaacagGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT