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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacatcagttctcttctgtttctgtttcttttttgtgtttacaaggctggcctaaatgacttcttttgacag

Basic information

species Glycine max
transcript GLYMA11G14960.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14960.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 7
TCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaa---cacatcagttctcttctgtttctgtttcttttttgtgtt-tacaaggctggcctaaatgacttcttttgacag
|||||| ||||| |||||||| ||||||||||| |||||||||||| | || |||||| ||||||| || |||||||||||  | ||||| ||||||||||||||    |  ||  || |||  |  || | ||   ||||||| |  | |   |      |   |   || ||||| |||
TCCACCATTGGGCTGGCAAGACACTGCAGCATACCTTGTTTTACCTGTCCTCCTTGTCATTTCTCAGTATGTTTCAATGGAGCTGATGAAGCCACCTCAGgtaaagaataagtctattttctgatcattttcttctctttttgtttcattcctagtaaaattgggtttttttttttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193484846|gb|FK452084.1|FK452084
EST:     TCTTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TC-TTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|22526016|gb|BU084827.1|BU084827
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|23052844|gb|BU577335.1|BU577335
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|16104820|gb|BI892560.1|BI892560
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|208292230|gb|GE092064.1|GE092064
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC