1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGGTTTCACCCTGGAGCCTAATTCTTCACAAAGCCTACCGATTGTATGTGCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAGgtaatgcttaacctccaaatgaagctagatggtaggaactggggttgtcagttagtgttgctgtttctttgtacttgaacaggcttaatcattcctgtttctatcatcattggcatatttttgtataaattatttcagatttatatctcataaaatattatttatttatttaacttttgtatctaaaaatcattattcag
species | Glycine max |
transcript | GLYMA11G14760.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAG GTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGAEST: gi|4294280|gb|AI442168.1|AI442168
genomic: GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAGgtaatgctta ... cattattcagGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
EST: GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAG GTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGAEST: gi|16346854|gb|BI972449.1|BI972449
genomic: GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAGgtaatgctta ... cattattcagGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
EST: GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAG GTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGAEST: gi|7591157|gb|AW706896.1|AW706896
genomic: GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAGgtaatgctta ... cattattcagGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
EST: GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAG GTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGAEST: gi|51337741|gb|CO981607.1|CO981607
genomic: GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAGgtaatgctta ... cattattcagGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
EST: GCTGACATAACTGAGCCTGTAATAAG GTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAANNCTGA
genomic: GCTGACATAACTGAGCCTGTAATAAGgtaatgctta ... cattattcagGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGTTTCACCCTGGAGCCTAATTCTTCACAAAGCCTACCGATTGTATGTGCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAGgtaatgcttaacctccaaatgaagctagatggtaggaactggggttgtcagttagtgttgctgtttctttgtacttgaacaggcttaatcattcctgtttctatcatcattggcatatttttgtataaattatttcagatttatatctcataaaatattatttatttatttaacttttgtatctaaaaatcattattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA