Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCTTGGTCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGgtatggacaatatatggttgcattagttgatatgtatatgtttgactctataattttctgatttcttatcatttttcttttgttctttgaattatgtatcccactttag

Basic information

species Glycine max
transcript GLYMA11G14550.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14550.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 4
GCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCTTGGTCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGgtatggacaatatatggttgcattagttgatatgtatatgtttgactctataattttctgatttcttatcatttt--tcttttgttctttgaattatgtatcccactttag
||||||||| | |||||||||||||||| | ||   ||| |||  ||||||||| ||||||||||||||||||||||||||||| || || ||||| ||||||     | | |    |  || ||      |  |  |  |||| || | | || || ||  || ||  |||     ||| |   ||||| | |||| |    || ||   
GCATGGACTAGTATCCCAGAGAAGAGAACTGGCTGGCAAGCTTTATGGTCATGTACTGACACTTAGCCTTCAAATGTATGGTTGTCGAGTGATCCAAAAGgtaccattagttt----tgccactaaacctcaacttgacttttg-ctgtgtgatattgtgtgttgttcacataaaggtctctctatctttca-ttatctg---cagttg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677598|gb|BQ629949.1|BQ629949
EST:     ATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAG                         GCCATTGAAGTTGTTGATCTGGATCATTATATAGAGATGGTTCAAGAGCTT
genomic: ATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGgtatggacaa ... cccactttagGCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTT