Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGTGTCCCTGAAGATGCAATCGACTTTATTGTCTCGACATTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagttctcttcactgcttatgtttctgttatcatgtataactaagatcatttgtcatataagaataccttctacacaacag

Basic information

species Glycine max
transcript GLYMA11G14500.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14500.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 5
TGAATGTGTCCCTGAAGATGCAATCGACTTTATTGTCTCGACATTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagtt-ctcttcactgcttatgtttctgttatcatgtat---aactaagatcatttgtcatataag-----aataccttctacacaacag--------
||||||||| ||||||||||| ||  | |||||  |||| ||||| |||||||| |||||||| || ||||||||||||||||| || || ||||||||||| ||   || || | ||||||| |||    | |   |  |   |  | |   |||  |  | |   |     ||||  ||  | |    |         
TGAATGTGTTCCTGAAGATGCTATTCAGTTTATCATCTCAACATTCTTTGATCAGGTTGTGACCCTCTCAACCCATCCATATGGGTGTCGTGTGATACAGgttagaaactttttattgcttatcttttacatcttgagggttcaatttgaagacataaggaagaagtgcttccaatatttttcataggcaaagatcaaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566555|gb|AW234198.1|AW234198
EST:     ATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAG                         AGAGTGCTGGAACATTGCGAAGACCCTACAACACAGCAGAAAGTTATGGAT
genomic: ATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagttctc ... tacacaacagAGAGTGCTGGAACATTGCGAAGACCCTACAACACAGCAGAAAGTTATGGAT
EST: gi|23057383|gb|BU578057.1|BU578057
EST:     ATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAG                         AGAGTGCTGGAACATTGCGAAGACCCTACAACACAGCAGAAAGTTATGGAT
genomic: ATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagttctc ... tacacaacagAGAGTGCTGGAACATTGCGAAGACCCTACAACACAGCAGAAAGTTATGGAT