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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGTCAAACTTGCTGATTTTGGCGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGgtattaattgtgtgatgttcttttgctaaatcatttgcttagaacttttaataggttccttgttcaaattgtgttctaacacctgaatataaagagtttg...

Basic information

species Glycine max
transcript GLYMA11G10810.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10810.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g02270.t01 (Vitis vinifera), 5'ss of exon 7
TCTTGTCAAACTTGCTGATTTTGGCGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGgtattaattgtgtgatgttcttttgctaaatcatttgcttagaacttttaataggttccttgttcaaattgtgttctaacacctgaatataaagagtttg-----
|||||| ||||||||||| ||||| ||||| ||||||||||| ||||| |||||||| || ||||| |||||||| ||||| || ||||||||||| ||||||  | ||||  | |||||||||   ||   || |     ||| ||||  |    |   | || |||  ||  |     || | ||| |||| | ||||     
TCTTGTGAAACTTGCTGACTTTGGTGTTGCAACAAAATTAACTGAGGCAGATGTTAATACGCATTCCGTTGTTGGGACACCATATTGGATGGCCCCTGAGgtac-atttgta-gttgttctttta--aatgtatgtagagtgaagttttgttcttattgatattgaaagagttcttgctaactttaatttaaa-attttgtatta

upper sequence: GLYMA11G10810.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S131_142V6.1 (Physcomitrella patens), 5'ss of exon 7
TCTTGTCAAACTTGCTGATTTTGGCGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGgt-attaattgtgtgatgttcttttgctaaatcatttgcttagaacttttaat--aggttccttgttcaaattgtgttctaacacctgaatataaagagtttg---------------------------------
    || ||||| || |||||||| ||||| || |||||||| ||||||||  | ||||||||||| |||||||| |||||||| |||||||| || ||||| | |  |  | |||    |||| | |   || ||     || ||||| | |  ||  || |  |||   || | |  | | |  |       ||| ||                                    
AGAGGTAAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGTACACCTTATTGGATGGCTCCTGAGgtcagtggtgttctgaacagctttggttttctctttacggaaggactttcattccagtgtcgtaattc---ttctatcatcaaatttattctagaagtgtcccagggaatcattaacggaatagtttatctgacag

upper sequence: GLYMA11G10810.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S66_286V6.1 (Physcomitrella patens), 5'ss of exon 7
TCTTGTCAAACTTGCTGATTTTGGCGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGgt-attaattgtgtgatgttcttttgctaaatcatttgcttagaacttttaataggttccttgttcaaattgtgttctaacacctgaatataaagagtttg----------------------------------------
    || ||||| || |||||||| ||||| || |||||||| ||||||||  | ||||||||||| |||||||| || ||||| |||||||| || ||||| | | ||| | ||        ||| |      |||  |      |||| |||      | | |   ||| |||    | |  ||  |||  |  ||                                           
GGAGGTGAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGCACTCCTTATTGGATGGCTCCTGAGgtcagtgattttctg-cccaacattgtttttctttttagtagaggtttttcatattagtatagctactattctgtcactaaatttgcttatttatcgtggacgtttcaaagagtagctgacagaaatagttaatctgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38193206|gb|CF922412.1|CF922412
EST:     ATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAG                         GTTATAGAAATGGCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGC
genomic: ATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGgtattaattg ... aatttttcagGTTATAGAAATGGCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGC