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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaattcattaataagcattgaagttcttttatgaatttggtatatgactttaataaaaagtaaactctgatatag

Basic information

species Glycine max
transcript GLYMA11G10770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G125052_T01 (Zea mays), 5'ss of exon 5
GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataa---attcattaataagcat-----tgaagt---tcttttatgaatttggtatatgactttaataaaaagtaaactctgatatag-------------------
||||||| |||||| || ||  | || ||||||||||| || || || |||||||| ||||| ||||| ||||||||||||||    | ||     |    ||     || ||    | |  |     ||| |  | ||||  |    |      |||  |  || |                    
GAAGTTGTTGAATCAGTGAAGAATGATTTTGGCAGCATTGACATACTAGTGCACTCTCTTGCTAATGGCCCAGAGgtacaatatcgcactcgcctgtgtatatgtgtgtgcagcgggtgtggtgcagcttttgcttgtgacactgtacattgtctaaccatcttaaaaaccacatgtcattttgaag

upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 7
GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaattcattaataagcattgaagttcttttatgaatttggtatatgactttaataaaaagtaaactctgatatag
||||| || ||||| || ||| | || ||||||||||| ||||||||||||||||||||||||||||| || |||||||  |        |  | | | |   ||||      | | |||||||       || | ||  |   | |||| | ||||
GAAGTGGCCGAATCCGTGAAACAGGATTTTGGCAGCATCGATATCCTTGTGCACTCACTTGCCAATGGGCCGGAGgtactgttttgctggttgtgatcttatcagttgaccattcattttggtac------tttacaagtaaacatctcttaaatag

upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S99_59V6.3 (Physcomitrella patens), 5'ss of exon 6
GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaa--taaattcattaa---taagcattgaa-gttcttttatgaatttggtatatgactttaataaaaagtaaactctgatatag---------------------------------------------------------------------------------------
|||  ||| ||| |||| || |  ||||| |||| ||| || ||||| ||||| ||||||||||||||||| ||||||     |  || || |||    | ||    || | || |   |    |  | |||||  || | |     | |   | |  |   |                                                                                       
GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattttatccactaagcacaggctgcaaatggtcctggtttcgctctgaatatgctttcatttctcggcaccattttcttgggtattgcttgaccttgtgtacaaactcgaatctgctgactctcgcttggtttgggctacataaattgtcttctacttctccactctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986202|gb|BE660310.1|BE660310
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
EST: gi|12773652|gb|BG238579.1|BG238579
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
EST: gi|7796512|gb|AW781909.1|AW781909
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
EST: gi|15204411|gb|BI427179.1|BI427179
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
EST: gi|9899327|gb|BE608295.1|BE608295
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
EST: gi|19053059|gb|BM731726.1|BM731726
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
EST: gi|7030180|gb|AW459963.1|AW459963
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA