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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCATCTCGTGGCTGGTGTGAGAAAATGGTTGATGTGGCAGAAGATTCATCgtaagtattgtaatgtaacctactctttgaaatttaatttcttctgggtttagtgtattgatacttcttacatatattggatag

Basic information

species Glycine max
transcript GLYMA11G10540.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10540.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g40620.1 (Oryza sativa), 5'ss of exon 7
AAAGCATCTCGTGGCTGGTGTGAGAAAATGGTTGATGTGGCAGAAGATTCATCgtaagtattgtaatgtaacctactctttgaaatttaatttcttctgggtttagtgtattgatacttcttacatatattggatag
|||||||| ||||||||||| ||||| ||||| ||| | |||||||| |||||||| |  ||  ||   |   || | ||      ||||  |  |   | | |    |  | |   || |  ||            
AAAGCATCACGTGGCTGGTGCGAGAAGATGGTGGATCTTGCAGAAGACTCATCgtaggatttacaa---attttatttttaagtggttaaccttatggagatgtgtaattctaac-tttgtagcag-----------

upper sequence: GLYMA11G10540.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g40620.2 (Oryza sativa), 5'ss of exon 7
AAAGCATCTCGTGGCTGGTGTGAGAAAATGGTTGATGTGGCAGAAGATTCATCgtaagtattgtaatgtaacctactctttgaaatttaatttcttctgggtttagtgtattgatacttcttacatatattggatag--------------
|||||||| ||||||||||| ||||| ||||| ||| | |||||||| |||||||| |  ||  ||   |   || | ||      ||||  |  |   | | |    |  | |   || |  ||  | | |  | |              
AAAGCATCACGTGGCTGGTGCGAGAAGATGGTGGATCTTGCAGAAGACTCATCgtaggatttacaa---attttatttttaagtggttaaccttatggagatgtgtaattctaac-tttgtagcaggtttcgctttgttctatctccacag

upper sequence: GLYMA11G10540.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G082026_T01 (Zea mays), 5'ss of exon 1
-------------------AAAGCATCTCGTGGCTGGTGTGAGAAAATGGTTGATGTGGCAGAAGATTCATCgtaagtattgtaatgtaacctactctttgaaatttaatttcttctgggtttagtgtattgatacttcttacat-atattggatag
                   |||||||| |||||||||||||| || ||||| ||| | ||||||||||| |||||||  ||  ||   ||   ||  ||    || || |||   | |   | ||   ||   || | ||||| |   |   |    
ACTCCCCCCCCCTCTGCAGAAAGCATCACGTGGCTGGTGTGAAAAGATGGTGGATCTTGCAGAAGATTCCTCgtaagctttacaa---aagtcacgttt----atgtacttttaaccg---taaggaaatgtgtaatgcttactttgcagcag----

upper sequence: GLYMA11G10540.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G28700.1 (Arabidopsis thaliana), 5'ss of exon 7
AAAGCATCTCGTGGCTGGTGTGAGAAAATGGTTGATGTGGCAGAAGATTCATCgtaagtattgtaatgtaacctactctttgaaattta-atttcttctgggtttagtg----tattgatacttcttacatatattggatag-
||| |  ||||||||||||||||||||||||||||||| | ||||||||||  ||||||||   |  | || | |         |  || ||   |  |||| || |       ||  ||| || ||   | | |||| |   
AAATCTACTCGTGGCTGGTGTGAGAAAATGGTTGATGTAGGAGAAGATTCAAAgtaagtat--cagggaaatcaaagaaaaaggagatatatcagtcttgggatttgcaaaatcatgaatagttgttgtgt-tgttggtttag

upper sequence: GLYMA11G10540.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0066g02600.t01 (Vitis vinifera), 5'ss of exon 7
AAAGCATCTCGTGGCTGGTGTGAGAAAATGGTTGATGTGGCAGAAGATTCATCgtaagtatt--gtaatgtaacctact----ctttgaaatttaatttcttctgggtttagtgtattgatacttcttacatatattggatag---------------------------
|  || |||||||| ||||||||||||||| ||||||| || ||||||||||||||||  ||  | | || |  ||        ||     |||  ||| |  |   |||  ||  ||   |  | ||||   |||| |||||                           
AGGGCTTCTCGTGGTTGGTGTGAGAAAATGATTGATGTTGCTGAAGATTCATCgtaagcttttgggactgcagtctgtcagaatttgtttgtttgttttttctttttttttttgctttagaaaattttac---tatttgataggttttttttttcacatatattggttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7693243|gb|AW761338.1|AW761338
EST:     AGAAGATTCATC                         GTTTCATTTTGTTCTTTCACCACAGCCTACACCTGCTACTCTCTATCTATT
genomic: AGAAGATTCATCgtaagtattg ... tattggatagGTTTCATTTTGTTCTTTCACCACAGCCTACACCTGCTACTCTCTATCTATT