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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATTCTAGACCTTGAAAAAGTTTTGGAGCCTTTGTTTTATTATTGGAAGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagttttactgtgtgctttttatttgcatgcgatccatatctactaactcttgttttaatctttaaaatgatcattatggttgttaaaatgattggtaagttttgactaagttactccattttctgtttctag

Basic information

species Glycine max
transcript GLYMA11G09890.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207699224|gb|GD680300.1|GD680300
EST:     AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATG                         GGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
genomic: AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagtttta ... ctgtttctagGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
EST: gi|9903367|gb|BE612335.1|BE612335
EST:     AGCAAAAGCGTCAATCTAAAGAATCATTTGTTGACTTCACAAACCGAATG                         GGATTTGAGAA
genomic: AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagtttta ... ctgtttctagGGATTTGAGAA
EST: gi|27809358|gb|CB063780.1|CB063780
EST:     AGCAAAAGCGTCAATCTAGAGAATCATTTGGTGACTTCACAAACCGAATG                         GGATTTGAGAAAG-TTAAAGAGTATATTGAGAAA
genomic: AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagtttta ... ctgtttctagGGATTTGAGAA-GCTTAAAGAATATATTGAGAAA
EST: gi|192313690|gb|FK007310.1|FK007310
EST:     AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATG                         GGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
genomic: AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagtttta ... ctgtttctagGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
EST: gi|9903129|gb|BE612097.1|BE612097
EST:     AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATG                         GGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
genomic: AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagtttta ... ctgtttctagGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
EST: gi|18038844|gb|BM307138.1|BM307138
EST:     AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATG                         GGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
genomic: AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagtttta ... ctgtttctagGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
EST: gi|42722808|gb|CK768707.1|CK768707
EST:     AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATG                         GGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
genomic: AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagtttta ... ctgtttctagGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
EST: gi|6747403|gb|AW317859.1|AW317859
EST:     AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATG                         GGATTTGAGAAGCTTAAAGAATATATTGAGAGATGGGAGGGTCCAGTGGTA
genomic: AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagtttta ... ctgtttctagGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
EST: gi|31459746|gb|CD401774.1|CD401774
EST:     AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATG                         GGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
genomic: AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagtttta ... ctgtttctagGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
EST: gi|13312483|gb|BG406134.1|BG406134
EST:     AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATG                         GGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
genomic: AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagtttta ... ctgtttctagGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
EST: gi|22928746|gb|BU545885.1|BU545885
EST:     AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATG                         GGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA
genomic: AGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagtttta ... ctgtttctagGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGATTCTAGACCTTGAAAAAGTTTTGGAGCCTTTGTTTTATTATTGGAAGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGgtgagttttactgtgtgctttttatttgcatgcgatccatatctactaactcttgttttaatctttaaaatgatcattatggttgttaaaatgattggtaagttttgactaagttactccattttctgtttctag

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