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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGgtccggagaattttgaattattcatttttgttctcctgaattatttttcattgtctgttactctgttttggcctccatataattgtttaatacttttgtttttcttag

Basic information

species Glycine max
transcript GLYMA11G09370.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09370.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 7
ATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGgtccggagaattttgaattatt-catttttgttctcctgaattatttttcattgtctgttactctgttttggcctccatataattgtttaatacttttgtttttcttag
|||||| ||||| || || ||||||||||| ||||| |||||||||||||||||||| ||||| || || || ||||||||| ||||||| ||||| ||||||  |  |  || ||||     || |  | ||   ||| ||| | ||   || | | ||  |   || |      ||| ||||  | ||| |  | ||| |||  |||
ATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctaggaatattagaataggcgcactcattttgctctgtattgtgttgtcttatatctttttagattgtaa----catttaataatataaca--tctgtcttttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208193934|gb|GD993783.1|GD993783
EST:     ACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAG                         GATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATC
genomic: ACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGgtccggagaa ... tttttcttagGATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATC
EST: gi|7042403|gb|AW472297.1|AW472297
EST:     ACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAG                         GATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTANAAGCATC
genomic: ACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGgtccggagaa ... tttttcttagGATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATC