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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCACTGCAGTGGGAGTCCAAGAATCTATTTTCCCTGAGCACTGCAATTCAGGATTGGCTTTCTTCAAgtaattggttttgattccaggctgccagtacttttgtatagtatatttaagtagagatgtatatgattggtgccaatattgttgtgatattctttag

Basic information

species Glycine max
transcript GLYMA11G07870.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07870.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
GTATGCACTGCAGTGGGAGTCCAAGAATCTATTTTCCCTGAGCACTGCAATTCAGGATTGGCTTTCTTCAAgtaattggttttgattccaggc--tgccagtacttttgtatag-tatatttaagtagagatgtatatgattggtgccaatattgttgtgatattctt-tag
|||  |  |||| ||||| ||| ||||| |  || |  |||||||||||||||||||||||||| |||||||||||    | |  ||  |  |  | |  |||    |||| |  ||| |||  |           |  || | |   || ||||   |||  || ||  ||
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag

upper sequence: GLYMA11G07870.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G36210.2 (Arabidopsis thaliana), 5'ss of exon 7
GTATGCACTGCAGTGGGAGTCCAAGAATCTATTTTCCCTGAGCACTGCAATTCAGGATTGGCTTTCTTCAAgtaattggttttgattccaggctgccagtacttttgtatagtatatttaagtagagatgtatatgattggtgccaatattg-ttgtgatattctttag
|||  | ||||| |||||||||||||||||  | |   ||||||| || ||||||||||||||| |||||||||||||||||| || | |       |  |  ||  | ||  |   | || |         || ||||  ||    ||||| || |||| ||||  ||
GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAgtaattggtttttatcctac-taaataacatgttgatgtaaaaatgtcaaattac------taagattattgt-ggtattgattatgat-ttctccag

upper sequence: GLYMA11G07870.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
GTATGCACTGCAGTGGGAGTCCAAGAATCTATTTTCCCTGAGCACTGCAATTCAGGATTGGCTTTCTTCAAgtaattggttttgattcca-ggctgccagtacttttgtatagtatatttaagtagagatgtatatgattggtgccaatattgttgtgatattctttag
||||||||| || |||||||| ||||||||  || |  | ||||||||||| || ||||||||| | |||||||||| |||| ||   ||  ||||| | |  || |  ||| | || |    | |     | | |   || |    | |||   ||||  | ||  ||
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataat-tactgttatggcatcatttgtttgtgatcttcagatttccgtgaattgctgcag