1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATAGCAGTTTGTGCTGATGACCCTGAGTTCCGCCATTACACAGACATCAAGGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgttatttgcacttatacataaaccacatgcatctctgtacgagttattgacaattaatgattagtttcttttacaataaagcctatagaacgt...
species | Glycine max |
transcript | GLYMA11G07530.1 |
intron # | 7 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|58018488|gb|CX705230.1|CX705230
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|151395789|gb|EV265666.1|EV265666
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|254328447|gb|GR835412.1|GR835412
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|58014268|gb|CX701010.1|CX701010
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192310085|gb|FK000649.1|FK000649
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192331258|gb|FK023769.1|FK023769
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192310086|gb|FK000650.1|FK000650
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192321263|gb|FK014353.1|FK014353
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|58022382|gb|CX709123.1|CX709123
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|58017496|gb|CX704238.1|CX704238
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|151397849|gb|EV267722.1|EV267722
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: TTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|10254828|gb|BE822594.1|BE822594
genomic: TTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|31469770|gb|CD411798.1|CD411798
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACCAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|151402592|gb|EV272405.1|EV272405
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192333274|gb|FK026155.1|FK026155
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|7686402|gb|AW757050.1|AW757050
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTNCACATCTGCTTGCTGAAATCAGAAGATTCTTTGACGACT ACAAGAAGAGTGAGAACGAAATATTTGATGTTGAAGACTATCTACCAGCTGEST: gi|209729103|gb|BW655080.1|BW655080
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|37996150|gb|CF807739.1|CF807739
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACNAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192333273|gb|FK026154.1|FK026154
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|22930561|gb|BU547700.1|BU547700
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192323914|gb|FK015665.1|FK015665
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|15203687|gb|BI426455.1|BI426455
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GAGCTTTCCTCCACATCGGCTTGCTGAA-TCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGEST: gi|21595665|gb|BQ610566.1|BQ610566
genomic: GAGCTT-CCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACCAGAAGAATGAGAACAAAATAGGTGATGTTTGA-GACTTTCTACCAGCTEST: gi|213596795|gb|DB964086.1|DB964086
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTT-GAAGACTTTCTACCAGCT
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACNAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|26057763|gb|CA800677.1|CA800677
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|58017619|gb|CX704361.1|CX704361
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192325458|gb|FK018399.1|FK018399
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|12689521|gb|BG155857.1|BG155857
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTGCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGATGACT ACGAGAAGAATGAGAACAAAATAGTTGATGGTTGA-GACTTTCTACCAGCTEST: gi|151406239|gb|EV276054.1|EV276054
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATG-TTGAAGACTTTCTACCAGCT
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|254336463|gb|GR842642.1|GR842642
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|17022265|gb|BM093299.1|BM093299
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTEST: gi|192321262|gb|FK014352.1|FK014352
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTT
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTTTACCAGCTGEST: gi|151401645|gb|EV271458.1|EV271458
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: AGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|19934354|gb|BQ079393.1|BQ079393
genomic: AGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|193553113|gb|FK507748.1|FK507748
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|192316544|gb|FK009313.1|FK009313
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|9986810|gb|BE660918.1|BE660918
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: TGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTGEST: gi|192294924|gb|FG986647.1|FG986647
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGEST: gi|209711074|gb|BW676430.1|BW676430
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTG
EST: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTNCTAC-AGCT
genomic: GGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTT-CTACCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGCAGTTTGTGCTGATGACCCTGAGTTCCGCCATTACACAGACATCAAGGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgttatttgcacttatacataaaccacatgcatctctgtacgagttattgacaattaatgattagtttcttttacaataaagcctatagaacgt
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT