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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATAgtaaggaagaattcctattcatggtgattagttgcctaaaattattcattatttatagaacttcttactaatatctttgggttgtgttttaactag

Basic information

species Glycine max
transcript GLYMA11G06200.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06200.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G66850.1 (Arabidopsis thaliana), 5'ss of exon 4
GAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATAgtaaggaag-aattcctattcatggtgattagttgcctaaa-attattcattatttatagaacttcttactaata--tctttgggttgtgttttaactag----------
|| || ||| |||| ||  | || ||||||||||||||||||||||||| ||||||||| | ||| || ||  |||   | |  ||      |  || | || | || ||  |        ||    | |  || | |  || ||| |   |  | | | |            
GAGATCAAACTTCTAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACAgtgagtaatcaatctgtttatatatcctctgtttacatatatataatctacctacccaaggcagtgtggctgaaaattcattgagcaattctctgattgtgcatgtacag

upper sequence: GLYMA11G06200.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 3
GAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATAgtaaggaag--aattcctattcatggtgattagttgcctaaaattattcat------tatttatag-aactt--cttactaatatctttgggttgtgttttaactag
||||||||| |||||||||| ||  | |||||||||||||||||||||| |||||| |||| ||| ||  |   | || |   | |||||  | |  ||| ||| |||  || |      | |  |||| |||||  || | ||||||||     || ||  |   |   
GAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACAgtgagtgatccagttgcagattatggtattca--tgcttaacatttgtcttgttagatttccatagtaacttaactgattaatatctcaattttatgcctatgcag-