Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgtactttccttcctgtgattgttattgatgcagaattcaaatgcagtttgcatgtaatttttttttttgtatgtatgcaagctgttgaattcacatttagctgtacaaataaattgcaaactataaacttttcttaattatcgataatttaccatttttcccaacag

Basic information

species Glycine max
transcript GLYMA11G05940.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05940.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G36960.2 (Arabidopsis thaliana), 5'ss of exon 6
TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgtacttt-ccttcctgtgattgttattgatgcagaattcaaatgcagtttgcatgtaatttttttttttgtatgt-atgcaagctgttgaattcacat-ttagctgtacaaataaattgcaaactataaacttttcttaattatcgataatttaccatttttcccaacag
 ||||||||||  ||||| ||||||||||| || |||||||| |||||||| |  | |  | | |||||      |||   ||        | ||    |   || | || | ||| || | ||   |  | |  | ||   || ||||                                                                   
CCATTTTGAGAGGTATGGGGAAATAACAGACTTATACATGCCTAAGgtactctatcattatctaattgt-----gtgcctgat--------aattctggtcagatctgttctcttggatttgatatcatttctctattttctatgttag-------------------------------------------------------------------

upper sequence: GLYMA11G05940.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 7
TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgtactttccttcctgtgattgttattgatgcagaattcaaatgcagtttgcatgtaatttttttttttgtatgtatgcaagctgttgaattcacatttagctgtacaaataaattgcaaactataaacttttcttaattatcgataatttaccatttttcccaacag
| ||||||||| ||||||||||||||| ||||||||||||||||||||     |   | |       |     |  | || |  ||        |   | |||   ||        |    | ||  ||      | ||  | |   ||||  | || || |||                                                 
TTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAGgtgagcactccctt-----cctcgcccactctgagtcaaaccttgacatatttataaacattc-------acaggtacatact------tgcatgtgtgcgtgtatcattatatggca-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207732484|gb|GD709049.1|GD709049
EST:     TGAAATAACAGATTTTGTTACATGCCAAAG                         GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGT
genomic: TGAAATAACAGA-TTTG-TACATGCCAAAGgtactttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGT
EST: gi|192298605|gb|FG989251.1|FG989251
EST:     TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG                         GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGT
genomic: TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgtactttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGT