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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTAATACTCCTATTATTGTTTTCACCAGAACAGGATCCATGGCTATTCTTTTGAGCCATTATAGGCCTTACACAACAATCTTTGCATTCACAAATGAgtaagcattagcaggatgtattgctcaataatgtttgcatttgcaaatgattaatcgttaacaggatgaaattaacctgtgaccgtgtattttctgtgtt...

Basic information

species Glycine max
transcript GLYMA11G04490.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04490.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0012g01170.t01 (Vitis vinifera), 5'ss of exon 10
CTCTTAATACTCCTATTATTGTTTTCACCAGAACAGGATCCATGGCTATTCTTTTGAGCCATTATAGGCCTTACACAACAATCTTTGCATTCACAAATGAgtaagcattagcaggatgtattgctcaataatgtttgcatttgcaaatgat-taatcgttaacaggatgaa-attaac-ctgtgaccgtgtattttctgtgtt
||||||||||||| || ||||| || || ||||| ||||||||||||||   ||| ||||||||| |||||| | ||||||||||||| ||||| ||||||||||    |  |  ||    ||    |||||  |   | |   ||    | | ||  |||  |  || |  ||||    | | |   | |||| |  ||   
CTCTTAATACTCCCATCATTGTCTTTACAAGAACTGGATCCATGGCTATAACTTTAAGCCATTATCGGCCTTCCTCAACAATCTTTGCCTTCACTAATGAgtaagtccaaataacattacatggattataataataataataataatcattattattattattattattattattattattattattat-tattattagta--