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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTGCATTGCTAAGTCACCTGCGGCATCCAAATATAGTCCAATATTATGGATCTGAGACGgtatatttattggactctttgttttattctaatattggtgtaacaattttgtgcgtcattttccaattttatacaaacaattggaaactcagcaactata...

Basic information

species Glycine max
transcript GLYMA11G02520.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 6
GAAATTGCATTGCTAAGTCACCTGCGGCATCCAAATATAGTCCAATATTATGGATCTGAGACGgtatatttattggactctttgtttta--ttctaatattggtgtaacaattttgtgcgtcattttccaattttatacaaacaat-tggaaactcagcaactata
|||||| |  | || |||| | | || |||||||||||||| ||||| |||||||||||||| |||  | |  || | ||||||| ||   ||||  |  || | |  ||| ||||   || ||  |      ||    || || | |  | | ||  |    |  
GAAATTTCGCTCCTCAGTCGCTTACGTCATCCAAATATAGTGCAATACTATGGATCTGAGACAgtaagtcttgtgtaatctttgtctttatttctgttcatgctcttgcaagtttg-atgtgatcctattccattggttaatcattctaaagaatcttctctca--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13478024|gb|BG507669.1|BG507669
EST:     TAAGTCACCTGCGGCATCCAAATATAGTCCAATATTATGGATCTGAGACG                         GTAGATGATAAACTTTATATATACTTGGAGTATGTCTCTGGTGGGTTAATC
genomic: TAAGTCACCTGCGGCATCCAAATATAGTCCAATATTATGGATCTGAGACGgtatatttat ... taataaacagGTAGATGATAAACTTTATATATACTTGGAGTATGTCTCTGGTGGGTCAATC