1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCTGCTGTGTTTGAGGGCAGGCAAGTGGACTGGATAACATCTCGGTCAAAATTTGACTTGGTTGCATCAACTTCTGTAGAAGCTGGCATCGATAACAAGgtatttgtaaaccgtcttatctctctcttacatgctttgtgcaaatgggaattgcttatctttgtttagctttgtgtttgtttcaaaaccattgccactc...
species | Glycine max |
transcript | GLYMA11G01410.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATTTGACTTGGTTGCATCAACTTCTGTAGAAGCTGGCATCGATAACAAG GTGAACCTGTTGAGAACAATGCTTTCTTGGGAAGAGCAATTGCGCTCTGAAEST: gi|120529895|gb|EH258029.1|EH258029
genomic: AATTTGACTTGGTTGCATCAACTTCTGTAGAAGCTGGCATCGATAACAAGgtatttgtaa ... tatcttttagGTGAACCTGTTGAGAACAATGCTTTCTTGGGAAGAGCAATTGCGCTCTGAA
EST: TGACTTGGTTGCATCAACTTCTGTAGAAGCTGGCATCGATAACAAG GTGAACCTGTTGAGAACAATGCTTTCTTGGGAAGAGCCATTGCGCTCTGAAEST: gi|11688413|gb|BF596089.1|BF596089
genomic: TGACTTGGTTGCATCAACTTCTGTAGAAGCTGGCATCGATAACAAGgtatttgtaa ... tatcttttagGTGAACCTGTTGAGAACAATGCTTTCTTGGGAAGAGCAATTGCGCTCTGAA
EST: AATTTGACTTGGTTGCATCAACTTCTGTAGAAGCTGGCATCGATAACAAG GTGAACCTGTTGAGAACAATGCTTTCTTGGGAAGAGCAATTGCGCTCTGAAEST: gi|120531104|gb|EH259237.1|EH259237
genomic: AATTTGACTTGGTTGCATCAACTTCTGTAGAAGCTGGCATCGATAACAAGgtatttgtaa ... tatcttttagGTGAACCTGTTGAGAACAATGCTTTCTTGGGAAGAGCAATTGCGCTCTGAA
EST: AATTTGACTTGGTTGCATCAACTTCTGTAGAAGCTGGCATCGATAACAAG GTGAACCTGTTGAGAACAATGCTTTCTTGGGAAGAGCAATTGCGCTCTGAA
genomic: AATTTGACTTGGTTGCATCAACTTCTGTAGAAGCTGGCATCGATAACAAGgtatttgtaa ... tatcttttagGTGAACCTGTTGAGAACAATGCTTTCTTGGGAAGAGCAATTGCGCTCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGCTGTGTTTGAGGGCAGGCAAGTGGACTGGATAACATCTCGGTCAAAATTTGACTTGGTTGCATCAACTTCTGTAGAAGCTGGCATCGATAACAAGgtatttgtaaaccgtcttatctctctcttacatgctttgtgcaaatgggaattgcttatctttgtttagctttgtgtttgtttcaaaaccattgccactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc