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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCATTTGGAGCTAAACGCTGGGTAGCTACATTAGACAGACAATGCGAACGTCTTGCCAGTTCAATGGCCAACAACATTCCAGCAGGGGACCTATGTGgtatgtgatcggctggagtgtgattttgtttttttgttaatttccaattaatctcaaatatatatatatgcatgcag

Basic information

species Glycine max
transcript GLYMA11G00570.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00570.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 5'ss of exon 7
CTGGCATTTGGAGCTAAACGCTGGGTAGCTACATTAGACAGACAATGCGAACGTCTTGCCAGTTCAATGGCCAACAACATTCCAGCAGGGGACCTATGTGgtatgtgat----cggctggagtgtg-attttgtttttttgttaatttcc---aattaat---ctcaaatatatatatatgcat--gcag-------
|| ||||||||||| || |||||||| |||||  ||||  | |||||||||||||| || ||| | ||||||| ||||||||| ||||| ||  |  ||||||   |||    |   |    | |  ||  | | || |    | |||||   |||||||   ||| | | |   ||| |  ||  |  |       
CTTGCATTTGGAGCAAAGCGCTGGGTGGCTACCCTAGATCGCCAATGCGAACGTCTAGCAAGTGCCATGGCCAGCAACATTCCTGCAGGAGATGTTGGTGgtaatggatatttcttttcatctttacatgatatcttgtcaccagtttccttaaattaatttcctccattgttgttattttgattggtggtgtacag