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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTCAGCAGCCGGTCTCCCCCATAATGAAATCGCTGCACAGATCTGTCGTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctgactgcttaatcatttacttaaattctttacttctgtactttttgtaagatgaaagtgatttttcaaaaataccatgttatgcag

Basic information

species Glycine max
transcript GLYMA10G42940.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 7
---ATTCTCAGCAGCCGGTCTCCCCCATAATGAAATCGCTGCACAGATCTGTCGTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctgactgcttaatcatttacttaaattctttacttct-----gtactttttgtaagatgaaagtgatttttcaaaaat--accatgttatgcag
   ||| || || || || ||||| || |||||||| ||||| ||||||||||||||||||||| | || |||  | | ||||||   |  || | |   ||||||          | |||       | ||    ||   || |        |  ||||  |   |  ||    ||   || | ||   |  | |||   | 
CCTATTTTCTGCTGCTGGACTCCCTCACAATGAAATTGCTGCTCAGATCTGTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAA---GGAAAGCATGCAGAGgtagctaatgtgtcctaactgcaaccctaccccctcccctacctacaaacatatttttcagagtacaaacagttgaacacacatctgcactcttaaaaaa

upper sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 8
ATTCTCAGCAGCCGGTCTCCCCCATAATGAAATCGCTGCACAGATCTGTCGTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctgactgc---ttaatcatttacttaaattctttacttctgtactttttgtaagatgaaagtgatttttcaaaaataccatgttatgcag----
 || || || || ||||| ||||| |||||||| ||||| ||||| || ||||||||||| || || |||||  ||||||| || ||||||||||| |||||||  |    |     ||| |  |     |  |   ||      ||   | ||   |  || | ||||||   | | | |        ||  ||     
CTTTTCTGCCGCAGGTCTTCCCCACAATGAAATTGCTGCTCAGATTTGCCGTCAGGCTGGTTTGGTTAAGCGTTTAGAGAAGTCAGATAATCTTCTCGAGgtatcacgatttatacattactggtccgtgtctacagttggaaattggtttgttacaattataacagtgatcccttagacagttagacatacccattaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533616|gb|EH261749.1|EH261749
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG                         GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
EST: gi|16278890|gb|BI943147.1|BI943147
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG                         GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
EST: gi|120533425|gb|EH261558.1|EH261558
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG                         GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
EST: gi|16277797|gb|BI942567.1|BI942567
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG                         GGTGGAGAAGAGGACAATTTTGCTATAGTATTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
EST: gi|16278507|gb|BI942940.1|BI942940
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG                         GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC