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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCTGGGCCTTGGAGAAACTGATGATGAGGTGAAGGAAGCAATGGCTGATTTAAGGGCCATTGATGTTGATATTGTGACATTTGGTCAATATTTGCAGgttagttatgtaaaatactttaatggtttccatacctgcttctcacagattagaaaccaaatctcaaaatcctatccaccatgcttacagatggtgctaa...

Basic information

species Glycine max
transcript GLYMA10G42600.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42600.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g56310.1 (Oryza sativa), 5'ss of exon 5
AATGCTGGGCCTTGGAGAAACTGATGATGAGGTGAAGGAAGCAATGGCTGATTTAAGGGCCATTGATGTTGATATTGTGACATTTGGTCAATATTTGCAGgttagttatgtaaaatactttaatggtttccatacctgcttctcacagattagaaaccaaatctcaaaatcctatccaccatgcttacagatggtgctaa
 ||||| || |||||||| ||||| || ||||||||  |||| |||  ||| ||||||||||||| |||||||||  ||||| | || || ||||||||||||||    |||    ||||||    |   ||    |       || | | ||      |  |   ||| | | | |   || |||||||          
CATGCTTGGTCTTGGAGAGACTGACGAGGAGGTGAAACAAGCCATGATTGACTTAAGGGCCATTGGTGTTGATATCTTGACACTGGGCCAGTATTTGCAGgttagcccagtac--cactttatcattagtcaagaata------actggtcagtctttgatgc---aaaccatctgcttgat-cttacag----------

upper sequence: GLYMA10G42600.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g43576.1 (Oryza sativa), 5'ss of exon 5
AATGCTGGGCCTTGGAGAAACTGATGATGAGGTGAAGGAAGCAATGGCTGATTTAAGGGCCATTGATGTTGATATTGTGACATTTGGTCAATATTTGCAGgttagttatgtaaaatacttt---aatggtttccata-cctgcttctcacagattagaaaccaaatctcaaaatcctatccaccatgcttacagatggtgctaa
 ||||| || || || || || ||||| ||||||||| || | |||  |||||| ||||||||||| ||||||||| |||| || || |||||||| |||||| | | | | |   |||||   |  | |||  ||| ||| ||   |     ||          |   |  |||| || | || |||||| | |         
CATGCTTGGTCTAGGTGAGACAGATGAAGAGGTGAAGCAAACCATGTGTGATTTGAGGGCCATTGACGTTGATATTCTGACCTTGGGACAATATTTACAGgtttgatctttgagcaactttgccagcgctttttatatcctcctggacttcctttgttcttgttgttgtatcatccaatgctccttgcttatacag--------

upper sequence: GLYMA10G42600.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G08415.1 (Arabidopsis thaliana), 5'ss of exon 5
AATGCTGGGCCTTGGAGAAACTGATGATGAGGTGAAGGAAGCAATGGCTGATTTAAGGGCCATTGATGTTGATATTGTGACATTTGGTCAATATTTGCAGgttagtta-----tgtaaaatacttta-atggtttccatacctgcttctcacagattagaaa----ccaaatctcaaaatcctatccaccatgcttacagatggtgctaa---------------
|||||| || ||||||||||| || || ||| |||||||||||||||||||| |||| || || |||||||||||| | ||| |||| || ||| | ||||| |  ||     |  || || |   | ||  ||  ||    | ||  |  ||   ||||||    |||||| |||||   | ||| || ||  ||| |   | | ||                 
AATGCTTGGTCTTGGAGAAACAGACGAAGAGTTGAAGGAAGCAATGGCTGATCTAAGAGCTATAGATGTTGATATTCTAACACTTGGCCAGTATCTACAGgtaaactaatcacttcaacattccccacatcattcgcaatattcctatttccaagatagaaagatcccaaatttcaaagaac-atctacgat--ttaaaaccgtttctcttgttccacaatgaag

upper sequence: GLYMA10G42600.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0071g01020.t01 (Vitis vinifera), 5'ss of exon 5
AATGCTGGGCCTTGGAGAAACTGATGATGAGGTGAAGGAAGCAATGGCTGATTTAAGGGCCATTGATGTTGATATTGTGACATTTGGTCAATATTTGCAGgttagtta-tgta-aaatactttaatggtttccatacctgcttctcacagattagaaaccaaatctcaaaatcct--atccaccatgcttacagatggtgctaa-
|||| |||| ||||| ||| ||||||||||| |||||||||| ||||||||| |||||||||| ||||| || ||| ||||| |||| |||||||| ||||| ||||| | |  |||||  ||  |  ||   | | ||     | | ||| ||       | | |    |      |||||| || || |    | ||  |   
AATGTTGGGTCTTGGGGAATCTGATGATGAGTTGAAGGAAGCCATGGCTGATCTAAGGGCCATAGATGTCGACATTTTGACACTTGGACAATATTTACAGgtgagttaatatgcaaatagctttttcatt---acatctaaga-taaaagagtaatggaggagtgtggctacttagaatccacaat-ctgagctgtagttttggc