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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGCTTATGCATTCTCTAGAGATGGGGCCATGCCATTGTCATCATTGTGGCACAAAGTTAACAAGCAGGAGgtccctatatatgcagtttggctttctgttttcatatcattttgcatggcactgacagtatgtattttattactcataagctatcatttatattttataataacctgcaaatttagttttctctgatttgttgaaaagtggaaaactatgtttcttactcaattgtaaatctattgcag

Basic information

species Glycine max
transcript GLYMA10G41560.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41560.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g04210.t01 (Vitis vinifera), 5'ss of exon 7
GATGGCTTATGCATTCTCTAGAGATGGGGCCATGCCATTGTCATCATTGTGGCACAAAGTTAACAAGCAGGAGgtccctatatatgcagtttggctttctgttttcatatcattttgcatggcactgacagtatgtattttattactcataagctatcatttatattttataataacctgcaaatttagttttctctgatttgttgaaaagtggaaaactatgtttcttactcaattgtaaatctattgcag
                               ||||| || ||  | |||||||| ||||| |||   ||||||||||| ||| |||||||||||||||||| |   ||||||||||| |||||| |||| |||||  | || |   ||||    | | | || || ||         |||| | | |      |     |    | | |     || ||    || ||||  |||   |  |          
------------------------------AATGCCTTTTTCGCCCTTGTGGCATAAAGTGAACTCACAGGAGGTCCCCATAAATGCAGTTTGGCTTTCTGCTGCTATATCATTTTGTATGGCATTGACGgtatgattcttttatttcatttttttttagttctactt---------ctgcgattatgacagccatcagtaaagtcatataca-aacacccctttcctta--caaccatgga----------