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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTCCAGAAAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgatttctttcacaacctttgtttttgcctattctctcctaaaatagttttgttctttgctttatcatatttggaaataacatggggcttatatattatgtttcatttttcag

Basic information

species Glycine max
transcript GLYMA10G41430.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 6
AACTTCCAGAAAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgat---ttctttcacaa-----cctttgtttttgccta--ttctctcctaaaatagttttgttctttgctttatcatatttggaaataacatggggcttatatattatgtttcatttttcag--
|| | || ||||||||||||||  |||| ||||| |||||| | |||||  | ||   |||||||||||| ||||||||||||||||   ||| ||||| |     | ||  ||||||   |  |||  | || | ||| || ||  ||  ||  | |    | |  ||    | |   | |  |   ||   | |  |||||     
AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccaacttactttcctttttgttcaatttcgtttctcatatacttctga-ctaagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctag

upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 6
AACTTCCAGAAAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgat---ttctttca-----caacctttgtttttgccta--ttctctcctaaaatagttttg-ttctttgctttatcatatttgg-aaataacatggggcttatatattatgtttcatttttcag
|| | || |||||||| |||||  |||| || || |||||| | |||||  | ||   |||||||||||| ||||||||||||||||   ||| ||||     | || ||  ||||||   |  |||  | || | ||| |||||  |     || |    ||||    |     || |   || || |   || |    ||||  ||
AATTACCTGAAAGATCATATGGAACTGATTGCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccgacctactttcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaagttactgatttga-atatagttttttctag

upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 7
AACTTCCAGAAAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgatttctttcacaacctttgtttttgcctattctctcctaaaatagttttgttctttgctt-tatcatatttggaaataacatg--gggcttatatattatgtttcatttttcag
||||||| |||||||| ||||| ||||| || || || ||| |||||||||| ||  | ||||||||||||||||||||||||||||||||  ||||| |  |    ||    ||| | |    |  |     ||||| |  | |  |||| || ||  | |   | |   | ||| |   || |  |    |||  ||
AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgatttct--cacaatccattcacttcaaaattgtttgtgtatgttccactgttcctgacatacatca-atatgatattgggaggcaagacttctgattttttctgttgtttctag