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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAGGATGTCAATTGCATCGGCAATTATCTTTGGGTCAGTATTTTGGAGAATGGGAAATTCTCAGACTTCAATACAAGACAGAATGGGATTACTTCAGgtttgtgatgttcttgattcctgtatgcttctttctcatattggcttgctgctaacatacattgcagaacaactatgaaatgttgctatgctccacattc...

Basic information

species Glycine max
transcript GLYMA10G41110.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41110.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g03144.1 (Oryza sativa), 5'ss of exon 7
GGCAAGGATGTCAATTGCATCGGCAATTATCTTTGGGTCAGTATTTTGGAGAATGGGAAATTCTCAGACTTCAATACAAGACAGAATGGGATTACTTCAGgtttgtgatgttcttgattcctgtatgcttcttt--ctcatattggcttgctgctaacatacattgcagaacaactatgaaatgttgctatgctccacattc------------------------------------------------------------------------------
 ||||| |||||  |||| || ||||| || ||||| || || || ||| ||||||| ||  |||||||||| ||||||||||| |||||| | ||||||||     || |  | ||||  | ||||  || ||   |   ||| ||| | |   | ||| | |   |         |  | |  | || | |   | |||                                                                               
AGCAAGAATGTCCGTTGCTTCAGCAATCATATTTGGATCTGTGTTCTGGCGAATGGGGAAAACTCAGACTTCCATACAAGACAGGATGGGACTTCTTCAGgt--agaatatgttggattttt-tatgactcgttgagttgaatttgctaggttgca-catgcttcagattttggacttacattcattctcttcctaatattgactttggtacaagctttttcattgtgtctgagcatttttctgattttgatctgtccctttttcaatttatgagttaag

upper sequence: GLYMA10G41110.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G119345_T02 (Zea mays), 5'ss of exon 2
GGCAAGGATGTCAATTGCATCGGCAATTATCTTTGGGTCAGTATTTTGGAGAATGGGAAATTCTCAGACTTCAATACAAGACAGAATGGGATTACTTCAGgtttgtgatgttcttgattcctgtatgcttct----ttctcatattggcttgctgctaacatacattgcagaacaactatgaaatgttgctatgctccacattc
  || | |||||  |||| || ||| |||| ||||| || || |||||| |||||||||| ||||| || || ||||||||||| |||||| ||||||||||     || || |  |    ||   ||||||    ||    |  | | ||||   ||   | |||| ||| | |  | | | ||  |   ||  ||    |  
ATCACGAATGTCTGTTGCTTCAGCAGTTATATTTGGATCTGTGTTTTGGCGAATGGGAAAATCTCAAACATCCATACAAGACAGGATGGGACTACTTCAGgt--agaatattgtgaacctttgagggcttctgaagttgaattcctagtttgcacatattttgcatt-caggatatatgtaacatactaacatattcactgtc-

upper sequence: GLYMA10G41110.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G01320.4 (Arabidopsis thaliana), 5'ss of exon 7
GGCAAGGATGTCAATTGCATCGGCAATTATCTTTGGGTCAGTATTTTGGAGAATGGGAAATTCTCAGACTTCAATACAAGACAGAATGGGATTACTTCAGgtttgtgatgttcttgattc-ctgtatgcttctttctcatattggcttgctgctaacatacattgcagaacaactatgaaatgttg-ctatgctccacattc
 ||||| |||||  ||||||| ||  | || |||||||| || || ||||||||||| || |||||||| ||||| || ||||||||||| || |||||||| |   |  || |   ||  || ||| | ||| |||  |  || |||| ||  || ||   ||  | |   |||| | |||| |  || |   |  ||   
TGCAAGAATGTCTGTTGCATCTGCTGTGATATTTGGGTCTGTTTTCTGGAGAATGGGGAAGTCTCAGACGTCAATTCAGGACAGAATGGGTTTGCTTCAGgtcttacacattttgcttttgctatatacatctctctttttctgtcttgttg--aatatcttttatatatatactaagcaatgataactgtatacttcag--

upper sequence: GLYMA10G41110.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g04670.t01 (Vitis vinifera), 5'ss of exon 7
GGCAAGGATGTCAATTGCATCGGCAATTATCTTTGGGTCAGTATTTTGGAGAATGGGAAATTCTCAGACTTCAATACAAGACAGAATGGGATTACTTCAGgtttgtgatgttcttgattcctgtatgcttctttctcatattggcttgctgctaacatacattgcagaacaactatgaaatgttgctatgctccacattc----
| ||||||||||||||||||| || || || |||||||| || || ||||||||||||   |||||||| |||||||| |||||||||||||| |||||||| ||  || || |   ||||| ||   ||||| |      |   ||  || |  | |    |||| || |   || ||||| |  |||      ||||     
GTCAAGGATGTCAATTGCATCAGCTATAATATTTGGGTCGGTTTTCTGGAGAATGGGACGATCTCAGACATCAATACAGGACAGAATGGGATTGCTTCAGgtatgatatattatcagttcctctaaaattcttgccttccct--tttcatggttgc-tgtgctgca-aatatacattaaatgataatatttgttgcattttatg