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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgactttatctttttctagttattctcatccattaaatagtcattgatcgattgagcaatgaccaatgctgatagttggtgctcctgaagttactgttt...

Basic information

species Glycine max
transcript GLYMA10G38590.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os10g11140.2 (Oryza sativa), 5'ss of exon 7
GCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtg-actttatctttttctagttattctcatccattaaatagtcattgatcgattgagcaatgaccaatgctgatagttggtgctcctgaagttactgttt---
|| |||||||| || || |||||||||||||||||||| || || || ||  ||||||||||||| |||||   |  || |||    |   ||||||| |  |||    ||| ||||||    | |  |||   |||| ||  |   |   |  |    |  ||     |   
GCCAATGGTGGCTTCATCATGAGTGCAAGCCATAATCCAGGTGGGCCAGATAATGATTGGGGTATCAAGgtatgccataacttaaattgtatattctcttgtattg--cagtaattgattagattaataata--caattctatttagtttcgtcctgacaaatatgaaatgaa

upper sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G025854_T02 (Zea mays), 5'ss of exon 7
GCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgactttatctttttctagt----tattct-catccattaaatagtcattgatcgattgagcaatgaccaatgctgatagttggtgctcctgaagttactgttt
|| ||||| || ||||| |||||||||||||||||||| || ||||| ||  |||| |||||||||||||||   |   |  |    ||     |||| |   | | ||  | |||  | |||  |||||          ||  ||| |  |||      |||     | ||  
GCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGACAATGACTGGGGTATTAAGgtgtgctaggcaataaaaagatgtgtattgtgttttccttctacagtggt-gatttattgaatccaagtggataatgaca--tggaatgtttgagcgagcagt--

upper sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 5'ss of exon 7
GCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgactttatctttttctagttattctcatccatta----aatagtcattgatcgattgagcaatgaccaatgctgatagttggtgctcctgaagttactgttt
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||  |     |    |     | || |    ||     |  |    | |     ||||  ||| |    | ||  |  ||   | || | | ||    |   
GCAAATGGAGGATTCATTATGAGTGCAAGCCATAATCCTGGTGGACCTGAATATGACTGGGGTATCAAGgtgaagtatcagtaacgtgcccttacttactttttgtcctaggaactgtagtatctttgaaaaatcaagcttacttttgattatggttcatcatgt-gtgg---

upper sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0022g02320.t01 (Vitis vinifera), 5'ss of exon 7
GCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgactttatctttttctagttat-tctcatccattaaatagtcattgatcgat-tgagcaatgaccaatgctgatagttggtgctcctgaagttactgttt
|| ||||| || ||||| ||||||||||||||||||||||| || ||||||||||||||||| || ||||||| | |   |  |  || |||| |    ||| ||  ||| | |||      | | |||| |       | | | | ||    || |   ||||||||   
GCCAATGGAGGTTTTATAATGAGTGCAAGCCATAATCCTGGTGGGCCTGAATATGATTGGGGCATCAAGgtgaatgttaatgctcatatttatatagtgtcctttgcataattattttaaattctcagcagttttttg-gtttacaatta-cactgcaatagttactgaac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532649|gb|EH260782.1|EH260782
EST:     TGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAG                         TTTAATTACAGCAGTGGACAACCTGCACCAGAATCCATCACTGACAAGATT
genomic: TGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGgtgactttat ... ttgactccagTTTAATTACAGCAGTGGACAACCTGCACCAGAATCCATCACTGACAAGATT