1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCATGGTTGCAAGAGGAGATCTTGGTGCAGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaagtccttttaaacagaaatgagattaatggtaaagataattatcagttggtattgcttcgtaacataaaaaaatgcttgctaatgtag
species | Glycine max |
transcript | GLYMA10G37210.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGGAGATCTTGGTGCAGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAG GAAGAGATAATAAGCATATGCCGTAGCATGGGAAAGGCTGTTATTGTGGCAEST: gi|151411074|gb|EV280885.1|EV280885
genomic: GAGGAGATCTTGGTGCAGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaagtcct ... gctaatgtagGAAGAGATAATAAGCATATGCCGTAGCATGGGAAAGGCTGTTATTGTGGCA
EST: GAGGAGATCTTGGTGCAGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAG GAAGAGATAATAAGCATATGCCGTAGCATGGGAAAGGCTGTTATTGTGGCAEST: gi|193564606|gb|FK521877.1|FK521877
genomic: GAGGAGATCTTGGTGCAGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaagtcct ... gctaatgtagGAAGAGATAATAAGCATATGCCGTAGCATGGGAAAGGCTGTTATTGTGGCA
EST: GAGANCTTGGTGCAGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAG GAAGAGATAATAAGCATATGCCGTAGCATGGGAAAGGCTGTTATTGTGGCA
genomic: GAGATCTTGGTGCAGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaagtcct ... gctaatgtagGAAGAGATAATAAGCATATGCCGTAGCATGGGAAAGGCTGTTATTGTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATGGTTGCAAGAGGAGATCTTGGTGCAGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaagtccttttaaacagaaatgagattaatggtaaagataattatcagttggtattgcttcgtaacataaaaaaatgcttgctaatgtag
- - - - - - GAGGAG
- - - - - - - AGGAGA
- - - - - - - GGAGAT
- - - - - - - - GAGATC
- - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAGG