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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCTTCATTTACTTCCATCAATGAATCCTGATGGTTTTAGTTTAAGAAAGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAGgtatatatctgttttttaatagtaatctgtatacagtatgttgataaagttggttgaaggtcattgttactatgaaatcaaattctaatattagaatcaa...

Basic information

species Glycine max
transcript GLYMA10G36590.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G106683_T01 (Zea mays), 5'ss of exon 7
TCACCTTCATTTACTTCCATCAATGAATCCTGATGGTTTTAGTTTAAGAAAGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAGgtatatatctgttttttaata---gtaatctgtatacagta-tgttgataaagttggttgaaggtcattgttactatgaa-atcaaatt--ctaatattagaatcaa-----------------------------------
 ||||||||| |||||||  | ||||| |||||||| |||  | | |||  |||||||||||| || ||||||||||| ||  |||||||||||||||| ||   |  ||  |||  | ||    |  | |   ||  | |   |  |      |  ||| |   | || ||  | |    || |||||  |       | |||  |                                   
GCACCTTCATATACTTCCGACGATGAACCCTGATGGGTTTGCTCTTAGATGGCGTGGTAATGCAAACAATATTGATCTCAACAGGGATTTTCCTGACCAAgtgagttacttctttacattacacctcttttccttatggaagcttctacttccctttttgtaccccttttttcttgtagccattaaattgacacgagccaaaattgacagttcttccccgttaacaacgatattgactacag

upper sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G106683_T02 (Zea mays), 5'ss of exon 7
TCACCTTCATTTACTTCCATCAATGAATCCTGATGGTTTTAGTTTAAGAAAGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAGgtatatatctgttttttaatagtaatctgta---tacagta-tgttgataaagttggttgaaggtcattgttactatgaa-atcaaatt--ctaatattagaatcaa---
 ||||||||| |||||||  | ||||| |||||||| |||  | | |||  |||||||||||| || ||||||||||| ||  |||||||||||||||| ||   |  ||  |||  | ||    ||| |    ||  | |   |  |      |  ||| |   | || ||  | |    || |||||  |       | |||  |   
GCACCTTCATATACTTCCGACGATGAACCCTGATGGGTTTGCTCTTAGATGGCGTGGTAATGCAAACAATATTGATCTCAACAGGGATTTTCCTGACCAAgtgagttacttctttacattacacctcttttccttatggaagcttctacttccctttttgtaccccttttttcttgtagccattaaattgacacgagccaaaattgacag

upper sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G127941_T01 (Zea mays), 5'ss of exon 6
TCACCTTCATTTACTTCCATCAATGAATCCTGATGGTTTTAGTTTAAGAAAGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAGgtatatatctgttttttaatag---taatctgtatacagtatgttgataaagttggttgaaggtcattgttactatgaaatcaaattctaatattagaatcaa
 ||||||||| |||||||  ||||||| |||||||| |||  | | |||  || ||||||||| || ||||||||||| ||  |||||||||||||||| ||   |  ||  |||  | ||    |  | |   ||  | |  ||           ||     ||||| || || || |  ||  ||| | |   |  | |  
GCACCTTCATATACTTCCGACAATGAACCCTGATGGGTTTGCTCTTAGATGGCATGGTAATGCAAACAATATTGATCTCAACAGGGATTTTCCTGACCAAgtgagttacttctttacattacacctcttttccttatggaagcttctacttccctttttgtactcattttttct-tgtagcca--ttcaattgacactagccg

upper sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 7
TCACCTTCATTTACTTCCATCAATGAATCCTGATGGTTTTAGTTTAAGAAAGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAGgtatatatctgttttttaatagtaatctgtatacagtatgttgataaagttggttgaaggtcattgttactatg---aaatcaaattctaatattagaatcaa
|||||| ||| ||||||| || |||||||||||||| |||    | || | |||||| ||||| |||||||||||||| ||||| |||||||| || ||||||| | | | |   | | | ||   || |     | |  || | ||    | |||| | |  || ||   |||   || |   |||  || | | ||   | 
TCACCTGCATATACTTCCTTCCATGAATCCTGATGGATTTTCACTTAGGAGGCGTGGCAATGCAAATAATATTGATCTTAATCGTGATTTTCCAGATCAGgtatct-tttctgcatcacttgttcccttttatttggacatttacaatccagattga-gtttgtttttgaaatgtgtaactggtatttgaaaaatggagaaa-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193349690|gb|FK315658.1|FK315658
EST:     AGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAG                         TTTGTTTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGA
genomic: AGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAGgtatatatct ... gaaataacagTTTGTTTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGA