Sequence
atgc intronic sequence ATGC exonic sequenceGGATATGGATCTTTCTTATTGCGAGATTTACCATTTGATGCTATAGAATTATGCATTTATGAGCAGCTCCGTATTGGGTATAAATTAGCGgtaagcttattatttgaagtgtctattgatttatatggactttataaaagttctcattggttctaaatcatctatttaaaaaaaagaagcattttgtttc...
Basic information
species | Glycine max |
transcript | GLYMA10G36580.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G36580.3 (Glycine max), 5'ss of exon 9
lower sequence: Vv18s0157g00180.t01 (Vitis vinifera), 5'ss of exon 8
GGATATGGATCTTTCTTATTGCGAGATTTACCATTTGATGCTATAGAATTATGCATTTATGAGCAGCTCCGTATTGGGTATAAATTAGCGgtaagcttattatttgaagtgtctattgatttatatggactttataaaagttctcattggttctaaatcatctatttaaaaaaaagaagcattttgtttc----------
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GGATATGGATCCTTTTTATTGCGAGATTTACCTTTTGATGCTCTCCAGTTTTGCATCTATGAGCAGCTACGGATAGGGTATAAGCTAGCGgtgagcttgcttt----agt---tattatttgacatgtacac-ataaa-gtgcacatgggttgaggatt-tccatttgtgcaaaagaataaaactaaaacaccagaaaaa
upper sequence: GLYMA10G36580.3 (Glycine max), 5'ss of exon 9
lower sequence: PP1S450_16V6.1 (Physcomitrella patens), 5'ss of exon 9
GGATATGGATCTTTCTTATTGCGAGATTTACCATTTGATGCTATAGAATTATGCATTTATGAGCAGCTCCGTATTGGGTATAAATTAGCGgtaagcttattatttgaagtgtctattga--tttatatggactt-tata---aaagttctcattg-gttctaaatcatctatttaaaa-aaaagaagcattttgtttc--------------------------------------------------------------------------------
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GGTTTTGGATCTTTCCTCCTTCGAGATTTACCATTTGATGCTATCCAGTTTTGCATTTACGAGCAGCTTAGATTGGGCTTGAAGAAAGTGgtaagttaacttatggatagctttttcaaggttggaacacatctgtatacgcacagttacgattttgttttaaatcttaagagaagaatagaactaaaagtgtgtgtcatcaccgggctgttctatgtatttatagttgctctcagaggagttgacgttgaattaatgcttgtttttcactctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|12689523|gb|BG155859.1|BG155859EST: CTATAGAATTATGCATTTATGAGCAGCTCCGTATTGGGTATAAATTAGCG GCAAAAAGAGATCCTAATGATCCAGAGAATGCTATGCTTGGGGCAGTGGCT
genomic: CTATAGAATTATGCATTTATGAGCAGCTCCGTATTGGGTATAAATTAGCGgtaagcttat ... acttttgcagGCAAAAAGAGATCCTAATGATCCAGAGAATGCTATGCTTGGGGCAGTGGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATATGGATCTTTCTTATTGCGAGATTTACCATTTGATGCTATAGAATTATGCATTTATGAGCAGCTCCGTATTGGGTATAAATTAGCGgtaagcttattatttgaagtgtctattgatttatatggactttataaaagttctcattggttctaaatcatctatttaaaaaaaagaagcattttgtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC