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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTGTGGAAGATTAGATGCTTCTAATGATGCTCAAGGTTACACTCTAAGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACGgtaactccacattactgtgttttatctttatctcaccttgttgtttatattaaaaattgttacagtgaagcaattcataacgaaacaatcgtattaataa...

Basic information

species Glycine max
transcript GLYMA10G35620.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193420608|gb|FK390545.1|FK390545
EST:     AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACG                         AGAAAGAGGTGCTCGAGCA
genomic: AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACGgtaactccac ... tttcttgcagAGAAAGAGGTGCTCGAGCA
EST: gi|193563942|gb|FK520445.1|FK520445
EST:     AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACG                         AGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
genomic: AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACGgtaactccac ... tttcttgcagAGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
EST: gi|193497025|gb|FK459937.1|FK459937
EST:     AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACG                         AGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
genomic: AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACGgtaactccac ... tttcttgcagAGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
EST: gi|207716491|gb|GD699659.1|GD699659
EST:     AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACG                         AGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
genomic: AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACGgtaactccac ... tttcttgcagAGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
EST: gi|193712737|gb|FK652322.1|FK652322
EST:     AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACG                         AGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
genomic: AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACGgtaactccac ... tttcttgcagAGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
EST: gi|207712809|gb|GD693433.1|GD693433
EST:     AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACG                         AGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
genomic: AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACGgtaactccac ... tttcttgcagAGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
EST: gi|207718756|gb|GD700650.1|GD700650
EST:     AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACG                         AGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
genomic: AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACGgtaactccac ... tttcttgcagAGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
EST: gi|193718252|gb|FK653060.1|FK653060
EST:     AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACG                         AGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
genomic: AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACGgtaactccac ... tttcttgcagAGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
EST: gi|193634805|gb|FK583474.1|FK583474
EST:     AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACG                         AGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
genomic: AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACGgtaactccac ... tttcttgcagAGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
EST: gi|193663878|gb|FK614200.1|FK614200
EST:     AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACG                         AGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
genomic: AGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACGgtaactccac ... tttcttgcagAGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
EST: gi|193397372|gb|FK361054.1|FK361054
EST:     CCCCATTGAAGCATCTAGGAGACG                         AGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC
genomic: CCCCATTGAAGCATCTAGGAGACGgtaactccac ... tttcttgcagAGAAAGAGGTGCTCGAGCACTGGAAGAGAGGTTGGCTACTGCACCTAGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTCTGTGGAAGATTAGATGCTTCTAATGATGCTCAAGGTTACACTCTAAGAGGTGAACCTTTGCCAGGTTCTGACCCCATTGAAGCATCTAGGAGACGgtaactccacattactgtgttttatctttatctcaccttgttgtttatattaaaaattgttacagtgaagcaattcataacgaaacaatcgtattaataa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA