1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAGgtatttaccaagcccaatgtgaaaaaataaataaataaatttaaaattgatttggaatgtggccatttcacaggttctaacttccaagagcaagaaattt...
species | Glycine max |
transcript | GLYMA10G35450.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAG GTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTGEST: gi|254340867|gb|GR854595.1|GR854595
genomic: TGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAGgtatttacca ... ttttttatagGTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTG
EST: TGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAG GTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTGEST: gi|6725446|gb|AW309845.1|AW309845
genomic: TGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAGgtatttacca ... ttttttatagGTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTG
EST: TGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAG GTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTGEST: gi|58016041|gb|CX702783.1|CX702783
genomic: TGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAGgtatttacca ... ttttttatagGTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTG
EST: TGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAG GTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTGEST: gi|9259137|gb|BE347284.1|BE347284
genomic: TGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAGgtatttacca ... ttttttatagGTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTG
EST: GGTTCTAGNNNNNNNGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAG GTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTGEST: gi|58023148|gb|CX709889.1|CX709889
genomic: GGTTCTAG-AAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAGgtatttacca ... ttttttatagGTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTG
EST: TGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAG GTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTGEST: gi|38193187|gb|CF922393.1|CF922393
genomic: TGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAGgtatttacca ... ttttttatagGTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTG
EST: TGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAG GTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTG
genomic: TGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAGgtatttacca ... ttttttatagGTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAGgtatttaccaagcccaatgtgaaaaaataaataaataaatttaaaattgatttggaatgtggccatttcacaggttctaacttccaagagcaagaaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaaaaa