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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCATGTGGATTTTGGGATGAACGTATCAGGAGGGGACATCATGTCAATACCTGGTCTCTATAGATTTGTACAGgtgctgcctttttttttttgttgttggtttctaattgtttatacttcttgattttttttttaatttatattttggattagaatttttgtggtagtaaact...

Basic information

species Glycine max
transcript GLYMA10G35410.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35410.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g04450.t01 (Vitis vinifera), 5'ss of exon 7
CCTCATGTGGATTTTGGGATGAACGTATCAGGAGGGGACATCATGTCAATACCTGGTCTCTATAGATTTGTACAGgtgctgccttttttt-ttttgttgttggtttctaattgtttatacttcttgattttttttttaatttatattt--tggattagaatttttgtggtagtaaact
|| ||||| || |||||| ||||  ||   ||||||||||||||||| |||||||| || ||| | ||||| |||||||||| ||  |    ||| |||     ||   || ||| | |||   |   | | |  | |    | ||    | ||  | ||   |    | | |  |  
CCACATGTAGACTTTGGGTTGAAGATACTGGGAGGGGACATCATGTCCATACCTGGCCTTTATCGGTTTGTTCAGgtgctgcattgataaactttattgggaaattaggat-gttgaaactcagtttatatgtgataatcccacatcagatagaggaaaaagatccaagcactgta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205926|gb|BU965179.1|BU965179
EST:     TATCAGGAGGGGACATCATGTCAATACCTGGTCTCTATAGATTTGTACAG                         GAAACAATNNNNNNNCAAGTTGCAAACCTCTATCTCTGGCCTCAAACCCTG
genomic: TATCAGGAGGGGACATCATGTCAATACCTGGTCTCTATAGATTTGTACAGgtgctgcctt ... ttgcttacagGAAACAATAAAAAAACAAGTTGCAAACCTCTATCTCTGGCCTCAAACCCTG