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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGGCATCTGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTAATGACTGATGTTTTTGGCAATTATGTTATACAAAAAgtataattagcttatacaactgaatactgagtactgacacaaatattctcttttttatttggttgttgatttaagaatttcatgcttgacatgctctgttgcag

Basic information

species Glycine max
transcript GLYMA10G35290.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g57390.1 (Oryza sativa), 5'ss of exon 5
AACGGCATCTGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTAATGACTGATGTTTTTGGCAATTATGTTATACAAAAAgtataattagcttatacaactgaatactgagtactgacacaaatattctcttttttatttggttgttgatttaagaatttcatgcttgacatgctctgttgcag----------------
|||||| ||||  |||||||||  ||  || ||||| |||||  ||||||| || ||  |  | ||||||||||||||||| || ||||||||||| |||||   |  |||   ||| | |  ||    |||| |   | ||| ||  | ||||||   || |     || ||| ||| | ||  || ||  | ||| |   |                 
AACGGCTTCTGCTGAAGAGAAGGACACCATTTTTCCAGAGATTCTTCCTCAAGCACGAACTCTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAAgtg--agcagccc-tactattccatc---agtattcggaaaaaaatgatgtttttttagtgat-----atgtaaaaatgttatcatttactggttctctctaattacttgtgcttggcag

upper sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G123537_T02 (Zea mays), 5'ss of exon 4
AACGGCATCTGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTAATGACTGATGTTTTTGGCAATTATGTTATACAAAAAgta--taattagcttatacaactgaata---ctgagtactgacacaaatattctcttttttatttggttgttga----tttaagaatttcatgcttgacatgctctgttgcag------------
||| || |||   ||| ||||||  | ||| |||||||||||| |||| || || ||| | || ||||||||||||||||| || ||||||||||| || ||    ||    | | ||||   ||| |   |||  |  |     ||  |||  | | || ||||  |  ||||    ||   | |  |||   || | ||      ||||              
AACTGCTTCTACTGAACAGAAGAATATGATTTTTCCTGAGATCCTTCCCCAGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaaccctcatttacattagaacaaatctggtttgttttttaatgatttgcgtattcattttataattgagagcttatgggagctcagtttttaaattagtgattgcttgggttttggcag

upper sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 5
AACGGCATCTGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTAATGACTGATGTTTTTGGCAATTATGTTATACAAAAAgtataattagcttatacaactgaatactgagtactgacacaaatattctcttttttatttggttgttgatttaagaatttcatgcttgacatgctctgttgcag
||| ||  | || || || ||||  |||||||| |||||||| ||||||||| ||| | | || ||||||||||| ||||| |||||||| ||||| ||||||||   |    |   || ||| |||    || | | |||  |  |   || ||  ||   |||||    |   | |||||                      
AACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCATACTTTGATGACTGATGTCTTTGGGAATTATGTCATACAGAAAgtatatccaagaaacttaa-tgagtac--gctatttataca--ttctgaattgttacttaaattgttttacttgcattttcag---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6914723|gb|AW396253.1|AW396253
EST:     CTGATGTTTTTGGCAATTATGTTATACAAAAA                         TTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTT
genomic: CTGATGTTTTTGGCAATTATGTTATACAAAAAgtataattag ... tctgttgcagTTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTT
EST: gi|16995621|gb|BM084993.1|BM084993
EST:     ATGCTCGTGCCTTAATGACTGATGTTTTTGGCAATTATGTTATACAAAAA                         TTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTT
genomic: ATGCTCGTGCCTTAATGACTGATGTTTTTGGCAATTATGTTATACAAAAAgtataattag ... tctgttgcagTTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTT