Sequence
atgc intronic sequence ATGC exonic sequenceTGGAGTGATACCAAATGTGAGGGCAAAAGGAAAAGCATCTGTGCGTGTTGCAGACATCCTAAACCGAATGCAAGCTGAGGAACCAGTTAACTCATCTGATgtaatcatgctctactattttttctcttcaagctaattagcttagcagaagaacaaacaaaagctatgttattaaatcgtatttatttaaaatgcaccatataaccctctgattatcttctctttgtttgtacag
Basic information
species | Glycine max |
transcript | GLYMA10G35210.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G35210.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G54860.2 (Arabidopsis thaliana), 5'ss of exon 7
TGGAGTGATACCAAATGTGAGGGCAAAAGGAAAAGCATCTGTGCGTGTTGCAGACATCCTAAACCGAATGCAAGCTGAGGAACCAGTTAACTCATCTGATgtaatcatgctctactattttttctcttcaagctaattagcttagcagaagaacaaacaaaagctatgttattaaatcgtatttatttaaaatgcaccatataaccctctgattatcttctctttgtttgtacag
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TGGAGTTATATCAAAAATGAGGGCAAAGGGCAAAGCATCAGTTCGTGTTGCAGACATTCTAAACCGCATGCAAGTGGAGGAACCTGTCAATTCGAATGATgtaa---------aata-------cctgcaa--tagtttgaatgtcataatcaccagttatttcgctatcttgtttttgtatcctttt----ttcactattctaaatgatgtttgttctatttcag---------
upper sequence: GLYMA10G35210.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g04720.t01 (Vitis vinifera), 5'ss of exon 7
TGGAGTGATACCAAATGTGAGGGCAAAAGGAAAAGCATCTGTGCGTGTTGCAGACATCCTAAACCGAATGCAAGCTGAGGAACCAGTTAACTCATCTGATgtaatcatgctctactattt-tttctcttcaagctaattagcttagcagaagaacaaacaaaa---gctatgttattaaatcgtatttatt--taaaatgcaccatataaccctctgatt--atcttctctttgtttg-tacag
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TGGACTGATACCAAATGTGAGGGCCAAAGGCAAAGCATCAGTTCGTGTTGCTGATATTCTCAATCGCATGCAAGCAGAAGAGCCAGTCAACACATCCGATgtaattttgcattagtttaagcctattttaaagaaaattgaccttg-gaaatctcatgctttatttgataacacactttgtagcatccattaatagattgttttttgtgataaaacaaattaataaattgtttttttacttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208181975|gb|GD975536.1|GD975536EST: CAGACATCCTAAACCGAATGCAAGCTGAGGAACCAGTTAACTCATCTGAT ATGGTTGTGCCAGAGATAAATACAGTAATCCTTTTAGATAGAGAG
genomic: CAGACATCCTAAACCGAATGCAAGCTGAGGAACCAGTTAACTCATCTGATgtaatcatgc ... gtttgtacagATGGTTGTGCCAGAGATAAATACAGTAATCCTTTTAGATAGAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAGTGATACCAAATGTGAGGGCAAAAGGAAAAGCATCTGTGCGTGTTGCAGACATCCTAAACCGAATGCAAGCTGAGGAACCAGTTAACTCATCTGATgtaatcatgctctactattttttctcttcaagctaattagcttagcagaagaacaaacaaaagctatgttattaaatcgtatttatttaaaatgcaccatataaccctctgattatcttctctttgtttgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA