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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaatttgttcactaaaaaaatttgcttgctttataccccagtataacaaaaatcattaagcaaatgacttgacataatatatttgacggtaaatgttttatgtgtttctatttttttattacag

Basic information

species Glycine max
transcript GLYMA10G34220.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193461496|gb|FK428895.1|FK428895
EST:     AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG                         GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: gi|22927860|gb|BU544999.1|BU544999
EST:     AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG                         GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: gi|193520218|gb|FK474667.1|FK474667
EST:     AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG                         GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: gi|15202846|gb|BI425623.1|BI425623
EST:     AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG                         GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: gi|6071922|gb|AW101309.1|AW101309
EST:     GAACAACCGATAG                         GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: GAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: gi|6502014|gb|AW203387.1|AW203387
EST:     AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG                         GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: gi|192308183|gb|FK001281.1|FK001281
EST:     AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG                         GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: gi|192303155|gb|FG997731.1|FG997731
EST:     AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG                         GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: gi|193665257|gb|FK607969.1|FK607969
EST:     AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG                         GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: gi|7235040|gb|AW570431.1|AW570431
EST:     AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG                         GAAAGTTACCATTACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: gi|7590589|gb|AW706338.1|AW706338
EST:     TTACGTATCTGGAACAACCGATAG                         GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: TTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
EST: gi|24205232|gb|BU964485.1|BU964485
EST:     AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG                         GAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT
genomic: AGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGgtaggaattt ... tttattacagGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTAT