Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGATATTGTTTGGTGGAGAAGATATGAGCAGGAAGCTGTTGAATGATGTCCATGTTCTCGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTACgtaagtggtatctattttacactttcagaaagtgtgttttcatgcattagagaagttccatatgaccataccaatttcttgcattttgatag

Basic information

species Glycine max
transcript GLYMA10G34180.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34180.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g05290.t01 (Vitis vinifera), 5'ss of exon 6
GAGTGATATTGTTTGGTGGAGAAGATATGAGCAGGAAGCTGTTGAATGATGTCCATGTTCTCGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTACgtaagtggtatctattttacactttcagaaagtgtgttttcatgcattagagaagttccatatgaccataccaatttcttgcattttgatag
|| ||||| |||||||||||||||||| ||||||  | ||| ||||||||||||||||||| ||||| || |  |||||||||||  || |  || |||||||||   |||||| |||||  | | ||||         |      | |||   ||||    |        || |||||||  |||||||||
GATTGATAATGTTTGGTGGAGAAGATAGGAGCAGACATCTGCTGAATGATGTCCATGTTCTTGATCTAGATACAATGACTTGGGATGTGGTGGAGGCTACgtaag---tatctaatttactttatgagaagtcacaaacttgc-tttcagaagggttctgctt--------cattttcttgtgttttgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193562436|gb|FK518225.1|FK518225
EST:     GTCCATGTTCTCGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTAC                         GCAGACACCTCCATCTCCTAGATATGATCATTCAGCTGCTATTCAAGGAGA
genomic: GTCCATGTTCTCGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTACgtaagtggta ... attttgatagGCAGACACCTCCATCTCCTAGATATGATCATTCAGCTGCTATTCAAGGAGA
EST: gi|8282738|gb|BE020299.1|BE020299
EST:     GTCCATGTTCTCGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTAC                         GCAGACACCTCCATCTCCTAGATATGATCATTCAGCTGCTATTCAAGGAGA
genomic: GTCCATGTTCTCGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTACgtaagtggta ... attttgatagGCAGACACCTCCATCTCCTAGATATGATCATTCAGCTGCTATTCAAGGAGA
EST: gi|193680450|gb|FK624370.1|FK624370
EST:     GTCCATGTTCTCGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTAC                         GCAGACACCTCCATCTCCTAGATATGATCATTCAGCTGCTATTCAAGGAGA
genomic: GTCCATGTTCTCGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTACgtaagtggta ... attttgatagGCAGACACCTCCATCTCCTAGATATGATCATTCAGCTGCTATTCAAGGAGA
EST: gi|151395590|gb|EV265467.1|EV265467
EST:     GTCCATGTTCTCGACCTTGAAAGTATGACTTGGGAAATGATAAAGACTAC                         GTAAGTGGCAGACACCTCCATCTCCTAGATATGATCATTCAGCTGCTATTC
genomic: GTCCATGTTCTCGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTACgtaagtggta ... attttgatagG-------CAGACACCTCCATCTCCTAGATATGATCATTCAGCTGCTATTC