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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTACCAAGAATGCAGTGCGTGGACTTTGGGCACGGCGTTCAAAGCTTAACCTGGTCGGTGCTCATATTAATGTTTTTACAGGTGAATGGACACAAAAGgtacaaagtatatattatttgttgaaaatatacatatacacatacatgtacatacatacacacatgtgtgtgtgtgtgtgtgtgtgatgctctactttct...

Basic information

species Glycine max
transcript GLYMA10G32320.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 8
AGTTACCAAGAATGCAGTGCGTGGACTTTGGGCACGGCGTTCAAAGCTTAACCTGGTCGGTGCTCATATTAATGTTTTTACAGGTGAATGGACACAAAAGgtacaaagtatatattattt--gttgaaaatatacatatacacata----catgtacatacatacacacatgtgtgtgtgtgtgtgtgtgtgatgctctactttct
|||||| || ||  | ||||||||| | ||||||||  | || || ||| |||| || ||||| ||||| ||||| ||||| |||||||||||||| ||||||  || | |  ||||| |  ||   |  | |  |  || |  |     |   | | |       |  || ||     || |   |||   |||  ||||     
AGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATGGACACAGAAGgtattaacttt-cattatctcagtgatagttttgaaactagatgttatatcgcttgcgttgtgttgctgatatgcaaacgtcttgttgtagaatgaactac-----

upper sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 8
AGTTACCAAGAATGCAGTGCGTGGACTTTGGGCACGGCGTTCAAAGCTTAACCTGGTCGGTGCTCATATTAATGTTTTTACAGGTGAATGGACACAAAAGgta-caaagtatatatt----atttgttgaaaata-tacatatacacatacatgtacatacatacacacatgtgtgtgtgtgtgtgtgtgtgatgctctactttct---------------
|||| | |||||||| ||| | ||||| |||||||| |||||||| ||  || |||| |||||||| || ||||| |||||||||||||||||||| |||||| ||||  ||   ||    || |||   ||  | |||   |  |   || | | | |  | | ||  ||  || | | | |||       || ||  | |                   
AGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATGGACACAGAAGgtaacaaaaaatggcttctgtatatgtcagaagaactacggtttgatgaac-tttgcttcaacaaactaattagtctttttttgtcacccaaattctaaaatggtagtgtttacttggcag

upper sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 9
AGTTACCAAGAATGCAGTGCGTGGACTTTGGGCACGGCGTTCAAAGCTTAACCTGGTCGGTGCTCATATTAATGTTTTTACAGGTGAATGGACACAAAAGgtacaaagtatatattatttgttgaaaatatacatatacacatacatgtacatac-atacacacatgtgtgtgtgtgtgtgtgtgtgatgctctactttct
|||||| ||||||||||||| |||| | ||||| || || |||||||| ||||| || ||||||||||| |||||||||||||||||||||||||| ||||||  |  | | | | |  ||   | | | ||        | |   | |   ||  ||| | | |||  |   | | |       | ||    |  ||| |
AGTTACAAAGAATGCAGTGCATGGATTATGGGCTCGCCGATCAAAGCTGAACCTAGTTGGTGCTCATATCAATGTTTTTACAGGTGAATGGACACAGAAGgtaacatttgt-tttaacatgaaaacattgtaagggccttcttttctatttctaagatagagaaatgcttagttatttaacatcataatttctttattttt