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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACAACACGTGTTGAGCGTTTTATTGGTTTTCTTCTTGCAATATGGGGTATATTGTTTTACACTCGACTTCTAAGTACGATGACCGAACAATTTAGGgtaaaatctgaagtattaagcattcattaagcaatcttttctgtgcatgccattaatttttagtcttcacaacag

Basic information

species Glycine max
transcript GLYMA10G32300.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32300.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 7
CAAACAACACGTGTTGAGCGTTTTATTGGTTTTCTTCTTGCAATATGGGGTATATTGTTTTACACTCGACTTCTAAGTACGATGACCGAACAATTTAGGgtaaaatct-gaagtattaagcattcattaagcaatcttt-tctgtgcatgccattaatttttagtcttcac---aacag
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CAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGAgtaagctcttgaaaagagaagcttttactaaagtttataggtatgttcat-ttacctccttatgaccatcatttggacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481623|gb|AW200894.1|AW200894
EST:     ATGACCGAACAATTTAGG                         AGTAATATGCAAAAGCTCAGGGACGGAACCCAAAGAGCAAGTTCTGGAGAC
genomic: ATGACCGAACAATTTAGGgtaaaatctg ... ttcacaacagAGTAATATGCAAAAGCTCAGGGACGGAACCC-AAGAGCAAGTTCTGGAGAC
EST: gi|207839516|gb|GD811725.1|GD811725
EST:     TTTTACACTCGACTTCTAAGTACGATGACCGAACAATTTAGG                         AGTAATATGCAAAAGCTCAGGGACGGAACCCAAGAGCAAGTTCTGGAGACT
genomic: TTTTACACTCGACTTCTAAGTACGATGACCGAACAATTTAGGgtaaaatctg ... ttcacaacagAGTAATATGCAAAAGCTCAGGGACGGAACCCAAGAGCAAGTTCTGGAGACT