1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
AGTGAATATCACCGAGGAGTTAGTGCATGGAACTTCGATATTGATGATTTGAAAGCACAAGCGGCATTGgtatgttattgtgttttcagattgtatttacttgactagtttttctctttctttgatctgaacaaatggcttcaattttactag
species | Glycine max |
transcript | GLYMA10G31630.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTAGTGCATGGAACTTCGATATTGATGATTTGAAAGCACAAGCGGCATTG --G-A---CGATGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAAEST: gi|7796671|gb|AW782065.1|AW782065
genomic: TTAGTGCATGGAACTTCGATATTGATGATTTGAAAGCACAAGCGGCATTGgtatgttatt ... attttactagATGCAGGACGATGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAA
EST: TTAGTGCATGGAACTTCGATATTGATGATNTGAAAGCACAAGCGGCATTG ATGCANGACGATGATGATATTGCAGAGATGAAGGAAGAAGATEST: gi|192331923|gb|FK026707.1|FK026707
genomic: TTAGTGCATGGAACTTCGATATTGATGATTTGAAAGCACAAGCGGCATTGgtatgttatt ... attttactagATGCAGGACGATGATGATATTGCAGAGATGAGGGAAGAAGAT
EST: AGCACAAGCGGCATTG ATGCAGGACGATGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAAEST: gi|5820456|gb|AI988662.1|AI988662
genomic: AGCACAAGCGGCATTGgtatgttatt ... attttactagATGCAGGACGATGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAA
EST: TTAGTGCATGGAACTTCGATATTGATGATTTGAAAGCACAAGCGGCATTG ATGCAGGACGATGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAAEST: gi|15202867|gb|BI425635.1|BI425635
genomic: TTAGTGCATGGAACTTCGATATTGATGATTTGAAAGCACAAGCGGCATTGgtatgttatt ... attttactagATGCAGGACGATGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAA
EST: TTAGTGCATGGAACTTCGATATTGATGATTTGAAAGCACAAGCGGCATTG ATGCAGGACGATGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAAEST: gi|162286134|gb|FC456636.1|FC456636
genomic: TTAGTGCATGGAACTTCGATATTGATGATTTGAAAGCACAAGCGGCATTGgtatgttatt ... attttactagATGCAGGACGATGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAA
EST: TTAGTGCATGGAACTTCGATATTGATGATTTGAAAGCACAAGCGGCATTG ATGCAGGACGATGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAA
genomic: TTAGTGCATGGAACTTCGATATTGATGATTTGAAAGCACAAGCGGCATTGgtatgttatt ... attttactagATGCAGGACGATGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGAATATCACCGAGGAGTTAGTGCATGGAACTTCGATATTGATGATTTGAAAGCACAAGCGGCATTGgtatgttattgtgttttcagattgtatttacttgactagtttttctctttctttgatctgaacaaatggcttcaattttactag
- - - - - - - - - - - - CATGGA